Protein: | gi|190406811 |
Organism: | Saccharomyces cerevisiae RM11-1a |
Length: | 368 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190406811.
Description | E-value | Query Range |
Subject Range |
|
6.0E-96 | [1..368] | [1..367] |
|
4.0E-94 | [1..368] | [1..363] |
|
2.0E-93 | [1..368] | [1..364] |
|
2.0E-93 | [1..368] | [1..364] |
|
2.0E-93 | [1..368] | [1..368] |
|
3.0E-93 | [1..368] | [1..364] |
Region A: Residues: [1-298] |
1 11 21 31 41 51 | | | | | | 1 MGIIDKIKAI EEEMARTQKN KATEHHLGLL KGKLARYRQQ LLADEAGSGG GGGSGFEVAK 60 61 SGDARVVLIG YPSVGKSSLL GKITTTKSEI AHYAFTTLTS VPGVLKYQGA EIQIVDLPGI 120 121 IYGASQGKGR GRQVVATART ADLVLMVLDA TKSEHQRASL EKELENVGIR LNKEKPNIYY 180 181 KKKETGGVKV TFTSPPKTNL TEQAIKMILR DYRIHNAEVL VRDDQCTIDD FIDVINEQHR 240 241 NYVKCLYVYN KIDAVSLEEV DKLAREPNTV VMSCEMDLGL QDVVEEIWYQ LNLSRVYT |
Detection Method: | |
Confidence: | 30.522879 |
Match: | 1egaA_ |
Description: | GTPase Era, N-terminal domain; GTPase Era C-terminal domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
GTP binding | 3.12773729841136 | bayes_pls_golite062009 |
guanyl ribonucleotide binding | 3.11992469401001 | bayes_pls_golite062009 |
guanyl nucleotide binding | 3.11160667523268 | bayes_pls_golite062009 |
binding | 2.79149251200147 | bayes_pls_golite062009 |
ribonucleotide binding | 1.3103969098333 | bayes_pls_golite062009 |
purine ribonucleotide binding | 1.31038866506213 | bayes_pls_golite062009 |
purine nucleotide binding | 1.30205192849426 | bayes_pls_golite062009 |
nucleotide binding | 1.28752914655985 | bayes_pls_golite062009 |
Region A: Residues: [299-368] |
1 11 21 31 41 51 | | | | | | 1 KKRGVRPVFD DPLVVRNNST IGDLCHGIHR DFKDKFKYAL VWGSSAKHSP QKCGLNHRID 60 61 DEDVVSLFAK |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.532 | d.15.1 | Ubiquitin-like |
View | Download | 0.448 | d.39.1 | Dynein light chain 8 (DLC8) |
View | Download | 0.717 | d.68.3 | SirA-like |
View | Download | 0.557 | d.68.4 | YhbY-like |
View | Download | 0.430 | d.15.1 | Ubiquitin-like |
View | Download | 0.400 | d.68.3 | SirA-like |
View | Download | 0.395 | d.68.6 | DNA-binding protein Sso10b (AlbA) |
View | Download | 0.386 | d.15.1 | Ubiquitin-like |
View | Download | 0.382 | d.39.1 | Dynein light chain 8 (DLC8) |
View | Download | 0.381 | d.15.2 | CAD & PB1 domains |
View | Download | 0.376 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
View | Download | 0.375 | c.51.1 | Anticodon-binding domain of Class II aaRS |
View | Download | 0.348 | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
View | Download | 0.343 | d.40.1 | CI-2 family of serine protease inhibitors |
View | Download | 0.339 | d.68.3 | SirA-like |
View | Download | 0.337 | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
View | Download | 0.331 | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
View | Download | 0.331 | d.15.1 | Ubiquitin-like |
View | Download | 0.322 | d.15.10 | TGS-like |
View | Download | 0.315 | d.68.3 | SirA-like |
View | Download | 0.310 | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
View | Download | 0.307 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
View | Download | 0.307 | d.15.2 | CAD & PB1 domains |
View | Download | 0.304 | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
View | Download | 0.301 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.299 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
View | Download | 0.299 | a.3.1 | Cytochrome c |
View | Download | 0.297 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
View | Download | 0.295 | d.68.3 | SirA-like |
View | Download | 0.290 | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
View | Download | 0.279 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
View | Download | 0.278 | d.68.3 | SirA-like |
View | Download | 0.273 | d.15.1 | Ubiquitin-like |
View | Download | 0.265 | d.76.1 | GYF domain |
View | Download | 0.264 | d.15.4 | 2Fe-2S ferredoxin-like |
View | Download | 0.253 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
View | Download | 0.252 | d.68.3 | SirA-like |
View | Download | 0.247 | d.11.1 | Penicillin-binding protein 2x (pbp-2x), c-terminal domain |
View | Download | 0.246 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
View | Download | 0.238 | a.64.1 | Saposin |
View | Download | 0.235 | a.64.1 | Saposin |
View | Download | 0.229 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
View | Download | 0.225 | a.3.1 | Cytochrome c |
View | Download | 0.221 | d.15.1 | Ubiquitin-like |
View | Download | 0.220 | d.39.1 | Dynein light chain 8 (DLC8) |
View | Download | 0.211 | d.39.1 | Dynein light chain 8 (DLC8) |
View | Download | 0.206 | d.68.3 | SirA-like |
View | Download | 0.205 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
Term | Confidence | Notes |
binding | 2.64537357529343 | bayes_pls_golite062009 |
nucleic acid binding | 2.09956015274464 | bayes_pls_golite062009 |
transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
guanyl nucleotide binding | 1.89320355239381 | bayes_pls_golite062009 |
guanyl ribonucleotide binding | 1.88721318481223 | bayes_pls_golite062009 |
GTP binding | 1.87900088157196 | bayes_pls_golite062009 |
DNA binding | 1.87765278833074 | bayes_pls_golite062009 |
GTPase activity | 1.23010905798386 | bayes_pls_golite062009 |
purine ribonucleotide binding | 1.21658213854831 | bayes_pls_golite062009 |
ribonucleotide binding | 1.21652144153182 | bayes_pls_golite062009 |
purine nucleotide binding | 1.21571071905795 | bayes_pls_golite062009 |
nucleotide binding | 1.20347573865566 | bayes_pls_golite062009 |
catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
motor activity | 0.926612891775441 | bayes_pls_golite062009 |
transcription factor activity | 0.682439846757997 | bayes_pls_golite062009 |
cytoskeletal protein binding | 0.498311726132348 | bayes_pls_golite062009 |
pyrophosphatase activity | 0.219555040684154 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 0.198256709027213 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.197994873032963 | bayes_pls_golite062009 |
protein binding | 0.170837278876362 | bayes_pls_golite062009 |
structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
helicase activity | 0.0775311459068899 | bayes_pls_golite062009 |