YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218704253, gi...
Organism:	Escherichia coli UMN026
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218704253, gi....

Description	E-value	Query Range	Subject Range
gi\|78518535, gi\|... - gi\|78692980\|ref\|ZP_00857494.1\| ABC transporter permease protein [Bradyrhizobium sp. BTAi1], gi\|78518...	271.0	[0..1]	[304..63]
gi\|68526086, gi\|... - gi\|94310351\|ref\|YP_583561.1\| binding-protein-dependent transport systems inner membrane component [R...	270.0	[0..1]	[306..1]
gi\|149950530, gi... - gi\|77683644\|ref\|ZP_00799090.1\| Binding-protein-dependent transport systems inner membrane component ...	269.0	[0..1]	[306..1]
gi\|33574213 - gi\|33574213\|emb\|CAE38545.1\| putative binding-protein-dependent transport permease [Bordetella parape... gi\|33597784 - gi\|33597784\|ref\|NP_885427.1\| putative binding-protein-dependent transport permease [Bordetella parap... gi\|33602686, gi\|... - gi\|33602686\|ref\|NP_890246.1\| putative binding-protein-dependent transport permease [Bordetella bronc... gi\|33572739, gi\|... - gi\|33593383\|ref\|NP_881027.1\| putative binding-protein-dependent transport permease [Bordetella pertu...	268.0	[0..1]	[306..1]
gi\|89346610, gi\|... - gi\|89901873\|ref\|YP_524344.1\| binding-protein-dependent transport systems inner membrane component [R...	267.0	[0..1]	[306..1]
gi\|106773667, gi... - gi\|106895070\|ref\|ZP_01362178.1\| Binding-protein-dependent transport systems inner membrane component...	266.0	[0..1]	[306..1]
gi\|254792025, gi... - gi\|254792025\|ref\|YP_003076862.1\| putative transport system permease protein [Escherichia coli O157:H... GSIC_ECO57 - Glutathione transport system permease protein GsiC OS=Escherichia coli O157:H7 GN=gsiC PE=3 SV=1 gi\|208732236, gi... - gi\|208815588\|ref\|ZP_03256767.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|25296838, gi\|... - pir\|\|F90742 probable transport system permease protein ECs0910 [imported] - Escherichia coli (strain... gi\|208738100, gi... - gi\|208822615\|ref\|ZP_03262934.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|209399916, gi... - gi\|209399916\|ref\|YP_002269498.1\| glutathione ABC transporter, permease protein GsiC [Escherichia col... gi\|15800581, gi\|... - gi\|15800581\|ref\|NP_286595.1\| putative transport system permease protein [Escherichia coli O157:H7 ED... gi\|217325168, gi... - gi\|217325168\|ref\|ZP_03441252.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|189372981, gi... - gi\|189372981\|gb\|EDU91397.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|189377757, gi... - gi\|189377757\|gb\|EDU96173.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|195936874 - gi\|195936874\|ref\|ZP_03082256.1\| putative transport system permease protein [Escherichia coli O157:H7... gi\|208809102, gi... - gi\|208809102\|ref\|ZP_03251439.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|189366486, gi... - gi\|189366486\|gb\|EDU84902.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|13360369, gi\|... - gi\|15830164\|ref\|NP_308937.1\| putative transport system permease protein [Escherichia coli O157:H7 st... gi\|168767339, gi... - gi\|189363341\|gb\|EDU81760.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|168776370, gi... - gi\|187768191\|gb\|EDU32035.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|189002863, gi... - gi\|189002863\|gb\|EDU71849.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|168750013, gi... - gi\|188015728\|gb\|EDU53850.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|189356282, gi... - gi\|189356282\|gb\|EDU74701.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15...	266.0	[0..1]	[306..1]
GSIC_SHIF8 - Glutathione transport system permease protein GsiC OS=Shigella flexneri serotype 5b (strain 8401) GN...	266.0	[0..1]	[306..1]
GSIC_ECOL6 - Glutathione transport system permease protein GsiC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7... GSIC_ECOL6 - Glutathione transport system permease protein gsiC OS=Escherichia coli O6 GN=gsiC PE=3 SV=1	265.0	[0..1]	[306..1]
gi\|73541614, gi\|... - gi\|73541614\|ref\|YP_296134.1\| binding-protein dependent transport system inner membrane protein [Rals...	265.0	[0..1]	[306..1]

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Predicted Domain #1

Region A:
Residues: [1-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNYVIKRLL GLIPTLFIVS VLVFLFVHML PGDPARLIAG PEADAQVIEL VRQQLGLDQP  60
   61 LYHQFWHYIS NAVQGDFGLS MVSRRPVADE IASRFMPTLW LTITSMVWAV IFGMAAGIIA 120
  121 AVWRNRWPDR LSMTIAVSGI SFPAFALGML LIQVFSVELG WLPTVGADSW QHYILPSLTL 180
  181 GAAVAAVMAR FTRASFVDVL SEDYMRTARA KGVSETWVVL KHGLRNAMIP VVTMMGLQFG 240
  241 FLLGGSIVVE KVFNWPGLGR LLVDSVEMRD YPVIQAEILL FSLEFILINL VVDVLYAAIN 300
  301 PAIRYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.045757
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.98776119907207	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.98726234902655	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.98726234902655	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.97287417765536	bayes_pls_golite062009
primary active transmembrane transporter activity	7.96249144456164	bayes_pls_golite062009
active transmembrane transporter activity	7.8678894318504	bayes_pls_golite062009
ATPase activity, coupled	7.29227234008448	bayes_pls_golite062009
ATPase activity	6.94069583578738	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.59903874016214	bayes_pls_golite062009
pyrophosphatase activity	6.52169210550643	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.50067149801529	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.5003333073452	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.78398318541319	bayes_pls_golite062009
ion transmembrane transporter activity	5.07829337366931	bayes_pls_golite062009
hydrolase activity	4.78607811092587	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
cation transmembrane transporter activity	4.35124450289762	bayes_pls_golite062009
substrate-specific transporter activity	3.91409799494188	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.2006428628965	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.95360205425391	bayes_pls_golite062009
sugar transmembrane transporter activity	2.67115360425434	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.58662753282402	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.56867883684303	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
maltose-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	2.14010989459818	bayes_pls_golite062009
maltose transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
disaccharide transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
glucoside transmembrane transporter activity	2.04706530621258	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.92041789093512	bayes_pls_golite062009
anion transmembrane transporter activity	1.81715503217512	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.79613658743425	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.74937989644368	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.798639167073698	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.72950761930647	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
maltooligosaccharide-importing ATPase activity	0.16532450344344	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: