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View Structure Prediction Details

Protein: CDPKT_ARATH
Organism: Arabidopsis thaliana
Length: 534 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDPKT_ARATH.

Description E-value Query
Range
Subject
Range
CDPKH_ARATH - Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1
449.0 [0..1] [534..1]

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Predicted Domain #1
Region A:
Residues: [1-364]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFCFSKFGK SQTHEIPISS SSDSSPPHHY QPLPKPTVSQ GQTSNPTSNP QPKPKPAPPP  60
   61 PPSTSSGSQI GPILNRPMID LSALYDLHKE LGRGQFGITY KCTDKSNGRE YACKSISKRK 120
  121 LIRRKDIEDV RREVMILQHL TGQPNIVEFR GAYEDKDNLH LVMELCSGGE LFDRIIKKGS 180
  181 YSEKEAANIF RQIVNVVHVC HFMGVVHRDL KPENFLLVSN EEDSPIKATD FGLSVFIEEG 240
  241 KVYRDIVGSA YYVAPEVLHR NYGKEIDVWS AGVMLYILLS GVPPFWGETE KTIFEAILEG 300
  301 KLDLETSPWP TISESAKDLI RKMLIRDPKK RITAAEALEH PWMTDTKISD KPINSAVLVR 360
  361 MKQF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.522879
Match: 1a06A
Description: CALMODULIN-DEPENDENT PROTEIN KINASE FROM RAT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphotransferase activity, alcohol group as acceptor 5.49988294224815 bayes_pls_golite062009
protein kinase activity 5.4586557943719 bayes_pls_golite062009
kinase activity 5.3287080791198 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 4.96052051118534 bayes_pls_golite062009
protein serine/threonine kinase activity 4.46381887831481 bayes_pls_golite062009
calmodulin-dependent protein kinase activity 4.31938467136214 bayes_pls_golite062009
transferase activity 3.97138602499442 bayes_pls_golite062009
binding 2.74863538127007 bayes_pls_golite062009
ATP binding 1.97600611746091 bayes_pls_golite062009
adenyl ribonucleotide binding 1.93596671856664 bayes_pls_golite062009
adenyl nucleotide binding 1.90928021591891 bayes_pls_golite062009
purine ribonucleotide binding 1.65732943334212 bayes_pls_golite062009
ribonucleotide binding 1.65726906484847 bayes_pls_golite062009
purine nucleotide binding 1.63763394711025 bayes_pls_golite062009
nucleotide binding 1.63195828048121 bayes_pls_golite062009
insulin receptor substrate binding 1.62657794525303 bayes_pls_golite062009
protein tyrosine kinase activity 1.3898059094397 bayes_pls_golite062009
receptor signaling protein serine/threonine kinase activity 1.38496328649031 bayes_pls_golite062009
receptor signaling protein activity 1.27291233344322 bayes_pls_golite062009
protein binding 1.22565748038754 bayes_pls_golite062009
catalytic activity 1.21655087018101 bayes_pls_golite062009
cytoskeletal protein binding 1.1208666000428 bayes_pls_golite062009
MAP kinase activity 0.81943579965027 bayes_pls_golite062009
transporter activity 0.553953601841147 bayes_pls_golite062009
cyclin-dependent protein kinase activity 0.499492353295369 bayes_pls_golite062009
tubulin binding 0.488928950975855 bayes_pls_golite062009
protein serine/threonine/tyrosine kinase activity 0.48345772948903 bayes_pls_golite062009
actin binding 0.464111806616899 bayes_pls_golite062009
magnesium ion binding 0.393328812780268 bayes_pls_golite062009
transmembrane transporter activity 0.37676337669549 bayes_pls_golite062009
MAP kinase kinase kinase activity 0.37115026509016 bayes_pls_golite062009
MAP kinase kinase activity 0.35402045013148 bayes_pls_golite062009
protein complex binding 0.343240719858581 bayes_pls_golite062009
signal transducer activity 0.270054246024761 bayes_pls_golite062009
molecular transducer activity 0.270054246024761 bayes_pls_golite062009
microtubule binding 0.196718452862042 bayes_pls_golite062009
substrate-specific transporter activity 0.0611721261859464 bayes_pls_golite062009
transmembrane receptor protein kinase activity 0.0556163711947139 bayes_pls_golite062009
transmembrane receptor activity 0.00652065412910241 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [365-534]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAMNKLKKLA LKVIAENLSE EEIKGLKQTF KNMDTDESGT ITFDELRNGL HRLGSKLTES  60
   61 EIKQLMEAAD VDKSGTIDYI EFVTATMHRH RLEKEENLIE AFKYFDKDRS GFITRDELKH 120
  121 SMTEYGMGDD ATIDEVINDV DTDNDGRINY EEFVAMMRKG TTDSDPKLIR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 2aaoA
Description: Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle