| Protein: | gi|42562972 |
| Organism: | Arabidopsis thaliana |
| Length: | 1647 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42562972.
| Description | E-value | Query Range |
Subject Range |
|
|
1406.0 | [0..1] | [1520..1] |
|
Region A: Residues: [1-190] |
1 11 21 31 41 51
| | | | | |
1 MARNAISDDE EDHELEDDDG EPVHGDPAEH DENDDEEDDD DVGNEYENDG FIVNDEDEEE 60
61 EEEEDEERKD SDEERQKKKK KRKKKDEGLD EDDYLLLQDN NVKFKKRQYK RLKKAQREQG 120
121 NGQGESSDDE FDSRGGTRRS AEDKIKDRLF DDVDVDDPPD DVGDEEDLVV EEDVVGSEDE 180
181 MADFIVDEDD
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [191-311] |
1 11 21 31 41 51
| | | | | |
1 EHGPPKRGNS KKKKYRQGSD ITAMRDANEI FGDVDELLTI RKKGLASNQR MERRLEDEFE 60
61 PTVLSEKYMT GNDDEIRQLD IPERMQISEE STGSPPVDEI SIEEESNWIY AQLASQLRES 120
121 D
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.380 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.369 | c.23.1 | CheY-like |
| View | Download | 0.361 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.336 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
|
Region A: Residues: [312-1186] |
1 11 21 31 41 51
| | | | | |
1 GTFDGRGFSV NKDDIAKFLE LHHVQKLEIP FIAMYRKEQC RSLLDTGDFD GANQGKKPET 60
61 KWHKVFWMIH DLDKKWLLLR KRKMALHGYY TKRYEEESRR VYDETRLNLN QYLFESVIKS 120
121 LKVAETEREV DDVDSKFNLH FPPGEIGVDE GQYKRPKRKS QYSICSKAGL WEVANKFGYS 180
181 AEQLGLALSL EKLVDELEDA KETPEEMAKN FVCAMFENSL AVLKGARHMA AVEISCEPSV 240
241 KKYVRGIYME NAVVSTSPTA DGNTVIDSFH QFSGIKWLRE KPLSKFEGAQ WLLIQKGEEE 300
301 KLLQVTFKLP ENYMNRLISD CNEHYLSVGV SKYAQLWNEQ RKLILEDALH AFLLPSMEKE 360
361 ARSLLTSRAK SRLLSEYGQA LWNKVSAGPY QKKEMDINLD EEAAPRVMAC CWGPGKPPNT 420
421 FVMLDSSGEV LDVLYAGSLT SRSQNVNDQQ RKKSDQDRVL KFMMDHQPHV VALGAVNLSC 480
481 TRLKDDIYEV IFQMVEEKPR DVGHGMDDLS IVYVDESLPR LYENSRISGE QLPQQSGNVR 540
541 RAVALGRYLQ NPLAMVATLC GPGREILSWK LHPLENFLQL DEKYGMVEQV MVDITNQVGI 600
601 DINLAASHDW FFSPLQFISG LGPRKAASLQ RSLVRAGSIF VRKDLIMHGL GKKVFVNAAG 660
661 FLRIRRSGLA ASSSQFIDLL DDTRIHPESY SLAQELAKDI YDEDVRGDSN DDEDAIEMAI 720
721 EHVRDRPASL RKVVLDEYLA SKKRENKKET YSNIIRELSC GFQDWRIPFK EPSPDEEFYM 780
781 ISGETEDTIA EGRIVQASVR RLQNGRAICV LDSGLTGMLM KEDFSDDGRD IVDLADQLKE 840
841 GDILTCKIKS IQKQRYQVFL ICKESEMRNN RHQHN
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 2oceA |
| Description: | No description for 2oceA was found. |
| Term | Confidence | Notes |
| nucleic acid binding | 3.87899047526266 | bayes_pls_golite062009 |
| DNA binding | 3.47278447192966 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.90653390639682 | bayes_pls_golite062009 |
| binding | 2.63617204791771 | bayes_pls_golite062009 |
| telomeric DNA binding | 2.51555240517937 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 2.42617682290608 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.13063800565247 | bayes_pls_golite062009 |
| transcription regulator activity | 2.10110937001387 | bayes_pls_golite062009 |
| structural molecule activity | 1.9177190829469 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.81524862921454 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.62996999055328 | bayes_pls_golite062009 |
| excinuclease ABC activity | 1.24466762466323 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 1.19766815287926 | bayes_pls_golite062009 |
| RNA polymerase activity | 1.19766815287926 | bayes_pls_golite062009 |
| ribonuclease activity | 1.19236946227657 | bayes_pls_golite062009 |
| endonuclease activity | 0.991569665925888 | bayes_pls_golite062009 |
| damaged DNA binding | 0.95191912850966 | bayes_pls_golite062009 |
| transcription factor activity | 0.937752547283357 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.76825863122436 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 0.708753843279937 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.598360955770972 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.583085644017496 | bayes_pls_golite062009 |
| nuclease activity | 0.57381531077345 | bayes_pls_golite062009 |
| translation regulator activity | 0.31332179848255 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.263197317040851 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 0.24906263529692 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.2080607201312 | bayes_pls_golite062009 |
| RNA binding | 0.18502033889261 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.125256208482441 | bayes_pls_golite062009 |
| telomerase inhibitor activity | 0.111973370145519 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.109774918833391 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.09423425042945 | bayes_pls_golite062009 |
| protein binding | 0.0528188351789111 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.0189279348688405 | bayes_pls_golite062009 |
| endoribonuclease activity | 0.016619833072142 | bayes_pls_golite062009 |
| chromatin binding | 0.0075451629397203 | bayes_pls_golite062009 |
|
Region A: Residues: [1187-1331] |
1 11 21 31 41 51
| | | | | |
1 QNVDAYYHED RNSLQLVKEK ARKEKELVRK HFKSRMIVHP RFQNITADQA TEYLSDKDFG 60
61 ESIVRPSSRG LNFLTLTLKI YDGVYAHKEI AEGGKENKDI TSLQCIGKTL TIGEDTFEDL 120
121 DEVMDRYVDP LVSHLKTMLN YRKFR
|
| Detection Method: | |
| Confidence: | 1.7 |
| Match: | 2bbuA |
| Description: | No description for 2bbuA was found. |
|
Region A: Residues: [1332-1647] |
1 11 21 31 41 51
| | | | | |
1 KGTKSEVDDL LRIEKGENPS RIVYCFGISH EHPGTFILSY IRSTNPHHEY IGLYPKGFKF 60
61 RKRMFEDIDR LVAYFQRHID DPLQESAPSI RSIAAKVPMR SPADHGSSGG SGWGSSQSEG 120
121 GWKGNSDRSG SGRGGEYRNG GGRDGHPSGA PRPYGGRGRG RGRGRRDDMN SDRQDGNGDW 180
181 GNNDTGTADG GWGNSGGGGW GSESAGKKTG GGSTGGWGSE SGGNKSDGAG SWGSGSGGGG 240
241 SGGWGNDSGG KKSSEDGGFG SGSGGGGSDW GNESGGKKSS ADGGWGSESG GKKSDGEGGW 300
301 GNEPSSRKSD GGGGGW
|
| Detection Method: | |
| Confidence: | 51.0 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
