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View Structure Prediction Details

Protein: PRS7B_ARATH
Organism: Arabidopsis thaliana
Length: 464 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRS7B_ARATH.

Description E-value Query
Range
Subject
Range
gi|119524342, gi... - gi|119719222|ref|YP_919717.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...
339.0 [0..3] [463..265]

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Predicted Domain #1
Region A:
Residues: [1-464]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIRDIMEDP ENEGPHNMRS DFEPLLSVLR LRDYETGDII EFDSTEASEE ALSDITEFGS  60
   61 TEASEAHFEE PYSARIKKVE KEINELAEKI CNLGIKESDT GLAPPNQWDL VSDKQMMQEE 120
  121 QPLLVATCTQ IISPNTEDAK YVVDIKKIGK YVVGLGDKAS PTDIEAGMRV GVDQKKYQIQ 180
  181 IPLPPKIDPS VTMMTVEEKP DATYSDIGGC KEQIEKIREV VELPMLHPEK FVRLGIDPPK 240
  241 GVLCYGPPGS GKTLVARAVA NRTGACFIRV VGSELVQKYI GEGARMVREL FQMARSKKAC 300
  301 ILFFDEIDAI GGARFDDGVG SDNEVQRTML EILYQLDGFD ARGNIKVLMA TNRPDILDPA 360
  361 LLRPGRLDRK VEFCLPDLEG RTQIFKIHTR TMSCERDIRF ELLAGLCPNS TGADIRSVCI 420
  421 EAGMYAIGAR RKSVTEKDFL DAVNKVVKGY QKFSATPKYM AYYI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.69897
Match: 1r7rA
Description: The crystal structure of murine p97/VCP at 3.6A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 4.71605970197038 bayes_pls_golite062009
peptidase activity 3.6994352506738 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 3.52737232558306 bayes_pls_golite062009
endopeptidase activity 3.48761031707503 bayes_pls_golite062009
binding 2.44689197844883 bayes_pls_golite062009
structural constituent of ribosome 1.58425861188564 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
nucleic acid binding 0.901460716954519 bayes_pls_golite062009
motor activity 0.85227282360407 bayes_pls_golite062009
microtubule motor activity 0.81728462394629 bayes_pls_golite062009
purine nucleotide binding 0.569910969126728 bayes_pls_golite062009
purine ribonucleotide binding 0.568840867400671 bayes_pls_golite062009
ribonucleotide binding 0.568779924702229 bayes_pls_golite062009
nucleotide binding 0.564275755355315 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.546796591575762 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.543610140926125 bayes_pls_golite062009
pyrophosphatase activity 0.540750418412449 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.517457589081898 bayes_pls_golite062009
DNA binding 0.341209040153805 bayes_pls_golite062009
ATP binding 0.1860481660648 bayes_pls_golite062009
adenyl ribonucleotide binding 0.152859582615242 bayes_pls_golite062009
adenyl nucleotide binding 0.138615225841109 bayes_pls_golite062009
protein binding 0.071010918255742 bayes_pls_golite062009
transcription regulator activity 0.050107780790998 bayes_pls_golite062009

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