| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.682693194275] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitochondrial respiratory chain | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| respiratory chain | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| mitochondrial membrane part | 2.5011E-4 | 2 | 100 | 2 | 6292 |
| mitochondrial inner membrane | 7.6048E-4 | 2 | 174 | 2 | 6292 |
| organelle inner membrane | 8.5997E-4 | 2 | 185 | 2 | 6292 |
| mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
| mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
| mitochondrial respiratory chain complex III | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| respiratory chain complex III | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| mitochondrial respiratory chain complex IV | 3.811E-3 | 2 | 12 | 1 | 6292 |
| respiratory chain complex IV | 3.811E-3 | 2 | 12 | 1 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| respiratory electron transport chain | 1.5158E-5 | 2 | 25 | 2 | 6292 |
| electron transport chain | 1.5158E-5 | 2 | 25 | 2 | 6292 |
| ATP synthesis coupled electron transport | 1.5158E-5 | 2 | 25 | 2 | 6292 |
| mitochondrial ATP synthesis coupled electron transport | 1.5158E-5 | 2 | 25 | 2 | 6292 |
| oxidation reduction | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| oxidative phosphorylation | 5.2295E-5 | 2 | 46 | 2 | 6292 |
| cellular respiration | 2.3525E-4 | 2 | 97 | 2 | 6292 |
| energy derivation by oxidation of organic compounds | 5.5711E-4 | 2 | 149 | 2 | 6292 |
| phosphorylation | 8.0494E-4 | 2 | 179 | 2 | 6292 |
| generation of precursor metabolites and energy | 9.5571E-4 | 2 | 195 | 2 | 6292 |
| phosphorus metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| phosphate metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| mitochondrial electron transport, ubiquinol to cytochrome c | 2.859E-3 | 2 | 9 | 1 | 6292 |
| mitochondrial electron transport, cytochrome c to oxygen | 3.1764E-3 | 2 | 10 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| electron carrier activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| heme-copper terminal oxidase activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
| cytochrome-c oxidase activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
| oxidoreductase activity, acting on heme group of donors | 3.811E-3 | 2 | 12 | 1 | 6292 |
| oxidoreductase activity, acting on heme group of donors, oxygen as acceptor | 3.811E-3 | 2 | 12 | 1 | 6292 |