From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.697800662423] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
BPT1 |
|
|
|
VBA1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
fungal-type vacuole membrane | 1.3647E-4 | 2 | 74 | 2 | 6292 |
vacuolar membrane | 3.1973E-4 | 2 | 113 | 2 | 6292 |
vacuolar part | 3.6682E-4 | 2 | 121 | 2 | 6292 |
fungal-type vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
lytic vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
storage vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
carboxylic acid transport | 8.6451E-5 | 2 | 59 | 2 | 6292 |
organic acid transport | 8.9432E-5 | 2 | 60 | 2 | 6292 |
cadmium ion transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
bilirubin transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
epidermis development | 9.5344E-4 | 2 | 3 | 1 | 6292 |
ectoderm development | 9.5344E-4 | 2 | 3 | 1 | 6292 |
cell fate specification | 9.5344E-4 | 2 | 3 | 1 | 6292 |
tissue development | 9.5344E-4 | 2 | 3 | 1 | 6292 |
epidermal cell fate specification | 9.5344E-4 | 2 | 3 | 1 | 6292 |
epidermal cell differentiation | 9.5344E-4 | 2 | 3 | 1 | 6292 |
organ development | 1.9064E-3 | 2 | 6 | 1 | 6292 |
system development | 1.9064E-3 | 2 | 6 | 1 | 6292 |
multicellular organismal development | 2.859E-3 | 2 | 9 | 1 | 6292 |
multicellular organismal process | 2.859E-3 | 2 | 9 | 1 | 6292 |
basic amino acid transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
monocarboxylic acid transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
cell fate commitment | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
carboxylic acid transmembrane transporter activity | 5.9419E-5 | 2 | 49 | 2 | 6292 |
organic acid transmembrane transporter activity | 7.2304E-5 | 2 | 54 | 2 | 6292 |
cadmium ion transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
bilirubin transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
basic amino acid transmembrane transporter activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
monocarboxylic acid transmembrane transporter activity | 4.4455E-3 | 2 | 14 | 1 | 6292 |
transition metal ion transmembrane transporter activity | 8.8811E-3 | 2 | 28 | 1 | 6292 |