| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.747902130414] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| ORT1 |
|
|
|
| PET8 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| amino acid transport | 3.9411E-5 | 2 | 40 | 2 | 6292 |
| amine transport | 6.9626E-5 | 2 | 53 | 2 | 6292 |
| carboxylic acid transport | 8.6451E-5 | 2 | 59 | 2 | 6292 |
| organic acid transport | 8.9432E-5 | 2 | 60 | 2 | 6292 |
| mitochondrial ornithine transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| ornithine transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| S-adenosylmethionine transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| sulfur amino acid transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| arginine biosynthetic process | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| arginine metabolic process | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| glutamine family amino acid biosynthetic process | 8.8811E-3 | 2 | 28 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| amino acid transmembrane transporter activity | 2.5061E-5 | 2 | 32 | 2 | 6292 |
| amine transmembrane transporter activity | 4.3504E-5 | 2 | 42 | 2 | 6292 |
| carboxylic acid transmembrane transporter activity | 5.9419E-5 | 2 | 49 | 2 | 6292 |
| organic acid transmembrane transporter activity | 7.2304E-5 | 2 | 54 | 2 | 6292 |
| L-ornithine transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| active transmembrane transporter activity | 3.6682E-4 | 2 | 121 | 2 | 6292 |
| S-adenosylmethionine transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
| sulfur amino acid transmembrane transporter activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
| substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
| L-amino acid transmembrane transporter activity | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
| cofactor transporter activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |