| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.801692434676] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| COX12 |
|
|
|
| COX17 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
| mitochondrial respiratory chain complex IV | 3.811E-3 | 2 | 12 | 1 | 6292 |
| respiratory chain complex IV | 3.811E-3 | 2 | 12 | 1 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| mitochondrial respiratory chain | 8.248E-3 | 2 | 26 | 1 | 6292 |
| respiratory chain | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| respiratory chain complex IV assembly | 1.4147E-6 | 2 | 8 | 2 | 6292 |
| cellular protein complex assembly | 7.2304E-5 | 2 | 54 | 2 | 6292 |
| protein complex assembly | 6.0304E-4 | 2 | 155 | 2 | 6292 |
| protein complex biogenesis | 6.0304E-4 | 2 | 155 | 2 | 6292 |
| cellular macromolecular complex assembly | 8.3223E-4 | 2 | 182 | 2 | 6292 |
| intracellular copper ion transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| cellular macromolecular complex subunit organization | 1.6882E-3 | 2 | 259 | 2 | 6292 |
| macromolecular complex assembly | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| macromolecular complex subunit organization | 3.2108E-3 | 2 | 357 | 2 | 6292 |
| cellular component assembly | 3.7349E-3 | 2 | 385 | 2 | 6292 |
| copper ion transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| copper chaperone activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| metallochaperone activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| oxidoreductase activity | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| copper ion binding | 2.859E-3 | 2 | 9 | 1 | 6292 |
| peroxiredoxin activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| thioredoxin peroxidase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| oxidoreductase activity, acting on heme group of donors | 3.811E-3 | 2 | 12 | 1 | 6292 |
| oxidoreductase activity, acting on heme group of donors, oxygen as acceptor | 3.811E-3 | 2 | 12 | 1 | 6292 |
| heme-copper terminal oxidase activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
| cytochrome-c oxidase activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
| peroxidase activity | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| oxidoreductase activity, acting on peroxide as acceptor | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| transition metal ion binding | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| antioxidant activity | 7.9314E-3 | 2 | 25 | 1 | 6292 |