From Publication:  Qiu J, Noble WS (2008) Predicting CoComplexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 
Notes:  Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.822779868047] 
Complex Size:  2 proteins 
Protein 
GO Cellular Component  GO Biological Process  GO Molecular Function 
ATP8 



CCS1 



Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
mitochondrial inner membrane  7.6048E4  2  174  2  6292 
organelle inner membrane  8.5997E4  2  185  2  6292 
mitochondrial membrane  1.7808E3  2  266  2  6292 
mitochondrial envelope  2.4514E3  2  312  2  6292 
mitochondrial protontransporting ATP synthase complex, coupling factor F(o)  3.811E3  2  12  1  6292 
protontransporting ATP synthase complex, coupling factor F(o)  3.811E3  2  12  1  6292 
mitochondrial part  5.6881E3  2  475  2  6292 
protontransporting twosector ATPase complex, protontransporting domain  6.0308E3  2  19  1  6292 
mitochondrial protontransporting ATP synthase complex  6.3477E3  2  20  1  6292 
protontransporting ATP synthase complex  6.3477E3  2  20  1  6292 
envelope  6.43E3  2  505  2  6292 
organelle envelope  6.43E3  2  505  2  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
superoxide dismutase copper chaperone activity  3.1786E4  2  1  1  6292 
copper chaperone activity  9.5344E4  2  3  1  6292 
metallochaperone activity  1.2712E3  2  4  1  6292 
copper ion binding  2.859E3  2  9  1  6292 
hydrogen ion transporting ATP synthase activity, rotational mechanism  4.7627E3  2  15  1  6292 
transition metal ion binding  7.6148E3  2  24  1  6292 