| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.867318267081] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| HTA1 |
|
|
|
| HTB1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nuclear nucleosome | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| nucleosome | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| protein-DNA complex | 8.0641E-5 | 2 | 57 | 2 | 6292 |
| nuclear chromatin | 1.3278E-4 | 2 | 73 | 2 | 6292 |
| chromatin | 1.4784E-4 | 2 | 77 | 2 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| chromatin assembly or disassembly | 3.0063E-5 | 2 | 35 | 2 | 6292 |
| DNA repair | 9.2646E-4 | 2 | 192 | 2 | 6292 |
| chromatin organization | 1.036E-3 | 2 | 203 | 2 | 6292 |
| response to DNA damage stimulus | 1.4011E-3 | 2 | 236 | 2 | 6292 |
| cellular response to stress | 2.1173E-3 | 2 | 290 | 2 | 6292 |
| cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
| postreplication repair | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |