| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.961762012003] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| 90S preribosome | 6.8716E-6 | 2 | 17 | 2 | 6292 |
| preribosome | 2.8346E-5 | 2 | 34 | 2 | 6292 |
| cytosolic small ribosomal subunit | 3.552E-5 | 2 | 38 | 2 | 6292 |
| small ribosomal subunit | 1.3278E-4 | 2 | 73 | 2 | 6292 |
| cytosolic ribosome | 2.5516E-4 | 2 | 101 | 2 | 6292 |
| cytosolic part | 3.7294E-4 | 2 | 122 | 2 | 6292 |
| ribosomal subunit | 8.4142E-4 | 2 | 183 | 2 | 6292 |
| cytosol | 2.0305E-3 | 2 | 284 | 2 | 6292 |
| ribosome | 2.1173E-3 | 2 | 290 | 2 | 6292 |
| ribonucleoprotein complex | 6.6615E-3 | 2 | 514 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| regulation of translation | 8.0641E-5 | 2 | 57 | 2 | 6292 |
| posttranscriptional regulation of gene expression | 9.2464E-5 | 2 | 61 | 2 | 6292 |
| regulation of cellular protein metabolic process | 1.151E-4 | 2 | 68 | 2 | 6292 |
| regulation of protein metabolic process | 1.3647E-4 | 2 | 74 | 2 | 6292 |
| translation | 3.5621E-3 | 2 | 376 | 2 | 6292 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| regulation of gene expression | 4.9915E-3 | 2 | 445 | 2 | 6292 |
| regulation of macromolecule biosynthetic process | 5.2416E-3 | 2 | 456 | 2 | 6292 |
| regulation of cellular biosynthetic process | 5.6164E-3 | 2 | 472 | 2 | 6292 |
| regulation of biosynthetic process | 5.6402E-3 | 2 | 473 | 2 | 6292 |
| regulation of macromolecule metabolic process | 6.004E-3 | 2 | 488 | 2 | 6292 |
| regulation of primary metabolic process | 6.6615E-3 | 2 | 514 | 2 | 6292 |
| regulation of cellular metabolic process | 7.2445E-3 | 2 | 536 | 2 | 6292 |
| regulation of metabolic process | 7.5452E-3 | 2 | 547 | 2 | 6292 |
| ribosomal small subunit biogenesis | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| structural constituent of ribosome | 1.1301E-3 | 2 | 212 | 2 | 6292 |
| structural molecule activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |
| rRNA binding | 5.0798E-3 | 2 | 16 | 1 | 6292 |