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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.21419253016]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
HFI1
  • SLIK (SAGA-like) complex
  • Ada2/Gcn5/Ada3 transcription activator complex
  • SAGA complex
    		•
  • chromatin modification
  • telomere maintenance
  • transcription from RNA polymerase II promoter
  • histone acetylation
    		•
  • transcription cofactor activity
  • transcription coactivator activity
    		•
    SPT20
  • SLIK (SAGA-like) complex
  • SAGA complex
    		•
  • chromatin modification
  • histone acetylation
    		•
  • transcription cofactor activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    SLIK (SAGA-like) complex 6.0632E-6 2 16 2 6292
    SAGA complex 1.1672E-5 2 22 2 6292
    SAGA-type complex 1.2783E-5 2 23 2 6292
    histone acetyltransferase complex 4.7798E-5 2 44 2 6292
    nucleoplasm part 1.5102E-3 2 245 2 6292
    Ada2/Gcn5/Ada3 transcription activator complex 1.5888E-3 2 5 1 6292
    nucleoplasm 1.7541E-3 2 264 2 6292
    nuclear lumen 5.1728E-3 2 453 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    histone acetylation 3.1832E-5 2 36 2 6292
    protein amino acid acetylation 5.2295E-5 2 46 2 6292
    protein amino acid acylation 8.6451E-5 2 59 2 6292
    covalent chromatin modification 1.9342E-4 2 88 2 6292
    histone modification 1.9342E-4 2 88 2 6292
    chromatin modification 7.0879E-4 2 168 2 6292
    chromatin organization 1.036E-3 2 203 2 6292
    post-translational protein modification 3.2108E-3 2 357 2 6292
    protein modification process 6.278E-3 2 499 2 6292
    chromosome organization 7.7677E-3 2 555 2 6292
    macromolecule modification 8.1649E-3 2 569 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    transcription cofactor activity 3.9411E-5 2 40 2 6292
    transcription factor binding 4.5626E-5 2 43 2 6292
    transcription regulator activity 2.8947E-3 2 339 2 6292
    transcription coactivator activity 6.6645E-3 2 21 1 6292
    protein binding 9.4468E-3 2 612 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle