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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.091] [SVM Score: 0.360469836706]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear outer membrane 1.8468E-4 2 86 2 6292
nuclear membrane 2.3525E-4 2 97 2 6292
outer membrane 7.9595E-4 2 178 2 6292
organelle outer membrane 7.9595E-4 2 178 2 6292
nuclear envelope 9.9543E-4 2 199 2 6292
nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
endomembrane system 3.9918E-3 2 398 2 6292
envelope 6.43E-3 2 505 2 6292
organelle envelope 6.43E-3 2 505 2 6292
ribonucleoprotein complex 6.6615E-3 2 514 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA 8.6451E-5 2 59 2 6292
rRNA processing 4.1068E-4 2 128 2 6292
rRNA metabolic process 4.7071E-4 2 137 2 6292
ncRNA processing 1.1624E-3 2 215 2 6292
ncRNA metabolic process 1.6621E-3 2 257 2 6292
ribosome biogenesis 3.0157E-3 2 346 2 6292
ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
RNA processing 3.6384E-3 2 380 2 6292
processing of 27S pre-rRNA 5.0798E-3 2 16 1 6292
rRNA modification 5.7138E-3 2 18 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATP-dependent RNA helicase activity 8.8811E-3 2 28 1 6292
RNA-dependent ATPase activity 9.1975E-3 2 29 1 6292
snoRNA binding 9.8303E-3 2 31 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle