From Publication:  Qiu J, Noble WS (2008) Predicting CoComplexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 
Notes:  Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.426691122833] 
Complex Size:  2 proteins 
Protein 
GO Cellular Component  GO Biological Process  GO Molecular Function 
DBP7 



RCL1 



Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
nuclear outer membrane  1.8468E4  2  86  2  6292 
nuclear membrane  2.3525E4  2  97  2  6292 
outer membrane  7.9595E4  2  178  2  6292 
organelle outer membrane  7.9595E4  2  178  2  6292 
nuclear envelope  9.9543E4  2  199  2  6292 
nucleolus  1.1194E3  2  211  2  6292 
nuclear membraneendoplasmic reticulum network  1.3539E3  2  232  2  6292 
endomembrane system  3.9918E3  2  398  2  6292 
nuclear lumen  5.1728E3  2  453  2  6292 
envelope  6.43E3  2  505  2  6292 
organelle envelope  6.43E3  2  505  2  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
ribosome biogenesis  3.0157E3  2  346  2  6292 
ribonucleoprotein complex biogenesis  3.5243E3  2  374  2  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
RNA3'phosphate cyclase activity  3.1786E4  2  1  1  6292 
cyclase activity  6.3568E4  2  2  1  6292 
ligase activity, forming phosphoric ester bonds  1.2712E3  2  4  1  6292 
ATPdependent RNA helicase activity  8.8811E3  2  28  1  6292 
RNAdependent ATPase activity  9.1975E3  2  29  1  6292 