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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.751953783336]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
SEC13
  • cytoplasm
  • extrinsic to membrane
  • COPII vesicle coat
  • nuclear pore
    		•
  • ER to Golgi vesicle-mediated transport
  • membrane budding
  • nuclear pore organization
  • ER-associated protein catabolic process
    		•
  • structural molecule activity
    		•
    SFB3
  • endoplasmic reticulum
  • peripheral to membrane of membrane fraction
  • COPII vesicle coat
    		•
  • ER to Golgi vesicle-mediated transport
    		•
  • molecular_function
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    COPII vesicle coat 1.4147E-6 2 8 2 6292
    ER to Golgi transport vesicle membrane 1.4147E-6 2 8 2 6292
    transport vesicle membrane 5.3053E-6 2 15 2 6292
    ER to Golgi transport vesicle 2.3495E-5 2 31 2 6292
    vesicle coat 2.8346E-5 2 34 2 6292
    coated vesicle membrane 3.0063E-5 2 35 2 6292
    cytoplasmic vesicle membrane 3.0063E-5 2 35 2 6292
    vesicle membrane 3.0063E-5 2 35 2 6292
    membrane coat 3.552E-5 2 38 2 6292
    coated membrane 3.552E-5 2 38 2 6292
    cytoplasmic vesicle part 3.744E-5 2 39 2 6292
    transport vesicle 5.0022E-5 2 45 2 6292
    coated vesicle 1.7194E-4 2 83 2 6292
    membrane-bounded vesicle 2.8654E-4 2 107 2 6292
    cytoplasmic vesicle 2.8654E-4 2 107 2 6292
    cytoplasmic membrane-bounded vesicle 2.8654E-4 2 107 2 6292
    vesicle 3.0291E-4 2 110 2 6292
    endomembrane system 3.9918E-3 2 398 2 6292
    peripheral to membrane of membrane fraction 4.4455E-3 2 14 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    ER to Golgi vesicle-mediated transport 1.7194E-4 2 83 2 6292
    Golgi vesicle transport 7.0879E-4 2 168 2 6292
    membrane budding 1.5888E-3 2 5 1 6292
    vesicle-mediated transport 2.9119E-3 2 340 2 6292
    intracellular transport 7.7118E-3 2 553 2 6292
    nuclear pore organization 8.8811E-3 2 28 1 6292
    establishment of localization in cell 9.0494E-3 2 599 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle