| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.920414473405] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| SWI/SNF-type complex | 3.9411E-6 | 2 | 13 | 2 | 6292 |
| SWI/SNF complex | 3.9411E-6 | 2 | 13 | 2 | 6292 |
| chromatin remodeling complex | 2.4511E-4 | 2 | 99 | 2 | 6292 |
| transcription factor TFIIF complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| Ino80 complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| DNA helicase complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| transcription factor TFIID complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| RSC complex | 6.3477E-3 | 2 | 20 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| chromatin remodeling | 1.151E-4 | 2 | 68 | 2 | 6292 |
| chromatin modification | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| chromatin organization | 1.036E-3 | 2 | 203 | 2 | 6292 |
| regulation of transcription involved in G1 phase of mitotic cell cycle | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
| ATP-dependent chromatin remodeling | 8.248E-3 | 2 | 26 | 1 | 6292 |
| G1 phase of mitotic cell cycle | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| G1 phase | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| general RNA polymerase II transcription factor activity | 1.0186E-4 | 2 | 64 | 2 | 6292 |
| RNA polymerase II transcription factor activity | 4.2367E-4 | 2 | 130 | 2 | 6292 |
| transcription regulator activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |