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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 1.25394717242]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
PRE2
  • proteasome core complex, beta-subunit complex
    		•
  • ubiquitin-dependent protein catabolic process
    		•
  • endopeptidase activity
    		•
    SCL1
  • mitochondrion
  • proteasome core complex, alpha-subunit complex
    		•
  • ubiquitin-dependent protein catabolic process
    		•
  • endopeptidase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    proteasome core complex 6.0632E-6 2 16 2 6292
    proteasome complex 5.6994E-5 2 48 2 6292
    proteasome core complex, alpha-subunit complex 2.224E-3 2 7 1 6292
    proteasome core complex, beta-subunit complex 2.224E-3 2 7 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    ubiquitin-dependent protein catabolic process 6.1087E-4 2 156 2 6292
    modification-dependent protein catabolic process 6.1087E-4 2 156 2 6292
    proteolysis involved in cellular protein catabolic process 6.3467E-4 2 159 2 6292
    modification-dependent macromolecule catabolic process 6.7534E-4 2 164 2 6292
    cellular protein catabolic process 7.3441E-4 2 171 2 6292
    proteolysis 8.8816E-4 2 188 2 6292
    protein catabolic process 8.9766E-4 2 189 2 6292
    cellular macromolecule catabolic process 1.7674E-3 2 265 2 6292
    macromolecule catabolic process 2.1762E-3 2 294 2 6292
    cellular catabolic process 4.3405E-3 2 415 2 6292
    catabolic process 6.2027E-3 2 496 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    endopeptidase activity 7.2304E-5 2 54 2 6292
    peptidase activity, acting on L-amino acid peptides 2.256E-4 2 95 2 6292
    peptidase activity 9.2646E-4 2 192 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle