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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nucleolar ribonucleoprotein complex 1.0141E-9 6 72 5 6292
nucleolus 1.3269E-9 6 211 6 6292
nuclear outer membrane 2.5194E-9 6 86 5 6292
nuclear membrane 4.6553E-9 6 97 5 6292
outer membrane 1.0053E-7 6 178 5 6292
organelle outer membrane 1.0053E-7 6 178 5 6292
nuclear lumen 1.3504E-7 6 453 6 6292
nuclear envelope 1.7614E-7 6 199 5 6292
nuclear membrane-endoplasmic reticulum network 3.8039E-7 6 232 5 6292
box C/D snoRNP complex 7.579E-7 6 2 2 6292
organelle lumen 1.3052E-6 6 660 6 6292
intracellular organelle lumen 1.3052E-6 6 660 6 6292
membrane-enclosed lumen 1.8602E-6 6 700 6 6292
endomembrane system 5.6251E-6 6 398 5 6292
nucleolar part 6.737E-6 6 45 3 6292
non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
intracellular non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
envelope 1.8321E-5 6 505 5 6292
organelle envelope 1.8321E-5 6 505 5 6292
ribonucleoprotein complex 1.9994E-5 6 514 5 6292
nuclear part 2.8697E-5 6 1103 6 6292
membrane part 6.967E-5 6 662 5 6292
organelle membrane 8.6631E-5 6 692 5 6292
preribosome 4.1945E-4 6 34 2 6292
nucleus 1.1592E-3 6 2041 6 6292
membrane 1.2554E-3 6 1198 5 6292
Noc4p-Nop14p complex 1.9064E-3 6 2 1 6292
organelle part 2.2664E-3 6 2282 6 6292
intracellular organelle part 2.2664E-3 6 2282 6 6292
Noc complex 4.7604E-3 6 5 1 6292
macromolecular complex 5.5477E-3 6 1635 5 6292
preribosome, small subunit precursor 5.7102E-3 6 6 1 6292
small-subunit processome 5.7102E-3 6 6 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 1.9032E-8 6 128 5 6292
ribosome biogenesis 2.6536E-8 6 346 6 6292
rRNA metabolic process 2.684E-8 6 137 5 6292
ribonucleoprotein complex biogenesis 4.2465E-8 6 374 6 6292
maturation of SSU-rRNA 1.0318E-7 6 59 4 6292
ncRNA processing 2.5971E-7 6 215 5 6292
ncRNA metabolic process 6.3506E-7 6 257 5 6292
cellular component biogenesis 1.7662E-6 6 694 6 6292
RNA processing 4.4689E-6 6 380 5 6292
rRNA modification 1.1517E-4 6 18 2 6292
RNA metabolic process 4.1658E-4 6 954 5 6292
gene expression 1.746E-3 6 1283 5 6292
RNA modification 1.7782E-3 6 70 2 6292
nucleic acid metabolic process 2.791E-3 6 1415 5 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.5228E-3 6 1566 5 6292
cellular nitrogen compound metabolic process 8.0643E-3 6 1770 5 6292
nitrogen compound metabolic process 8.5237E-3 6 1791 5 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


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Created and Maintained by: Michael Riffle