YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

U4/U6 x U5 tri-snRNP complex 1.7342E-19 8 32 8 6292
small nuclear ribonucleoprotein complex 6.3853E-17 8 63 8 6292
U6 snRNP 3.528E-10 8 11 4 6292
ribonucleoprotein complex 1.8861E-9 8 514 8 6292
U5 snRNP 4.8801E-7 8 14 3 6292
nuclear part 8.7333E-7 8 1103 8 6292
macromolecular complex 2.0527E-5 8 1635 8 6292
small nucleolar ribonucleoprotein complex 7.7231E-5 8 72 3 6292
nucleus 1.2145E-4 8 2041 8 6292
U1 snRNP 1.9058E-4 8 17 2 6292
organelle part 2.9704E-4 8 2282 8 6292
intracellular organelle part 2.9704E-4 8 2282 8 6292
nucleolus 1.8378E-3 8 211 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear mRNA splicing, via spliceosome 2.8226E-15 8 99 8 6292
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.068E-15 8 100 8 6292
RNA splicing, via transesterification reactions 5.374E-15 8 107 8 6292
RNA splicing 3.036E-14 8 132 8 6292
mRNA processing 1.1951E-13 8 156 8 6292
mRNA metabolic process 1.5167E-12 8 213 8 6292
RNA processing 1.6507E-10 8 380 8 6292
RNA metabolic process 2.7241E-7 8 954 8 6292
gene expression 2.9372E-6 8 1283 8 6292
nucleic acid metabolic process 6.4427E-6 8 1415 8 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.4527E-5 8 1566 8 6292
cellular nitrogen compound metabolic process 3.8773E-5 8 1770 8 6292
nitrogen compound metabolic process 4.2618E-5 8 1791 8 6292
mRNA catabolic process 6.797E-5 8 69 3 6292
RNA catabolic process 1.0588E-4 8 80 3 6292
cellular macromolecule metabolic process 3.0018E-4 8 2285 8 6292
macromolecule metabolic process 3.7455E-4 8 2349 8 6292
primary metabolic process 2.0036E-3 8 2896 8 6292
nuclear mRNA 3'-splice site recognition 2.5415E-3 8 2 1 6292
cellular metabolic process 2.9013E-3 8 3033 8 6292
cellular macromolecule catabolic process 3.5334E-3 8 265 3 6292
metabolic process 3.9991E-3 8 3157 8 6292
macromolecule catabolic process 4.7456E-3 8 294 3 6292
mRNA splice site selection 7.6075E-3 8 6 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 1.6533E-8 8 367 7 6292
nucleic acid binding 1.0515E-6 8 666 7 6292
binding 1.0087E-4 8 1294 7 6292
U5 snRNA binding 2.5415E-3 8 2 1 6292
snRNA binding 6.3431E-3 8 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle