YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

U6 snRNP 3.7591E-17 7 11 6 6292
small nuclear ribonucleoprotein complex 7.1663E-15 7 63 7 6292
U4/U6 x U5 tri-snRNP complex 7.3521E-14 7 32 6 6292
ribonucleoprotein complex 2.338E-8 7 514 7 6292
small nucleolar ribonucleoprotein complex 5.3771E-7 7 72 4 6292
nuclear part 5.0081E-6 7 1103 7 6292
nucleolus 3.9747E-5 7 211 4 6292
macromolecular complex 7.9244E-5 7 1635 7 6292
nucleus 3.7528E-4 7 2041 7 6292
nuclear lumen 7.7894E-4 7 453 4 6292
organelle part 8.2061E-4 7 2282 7 6292
intracellular organelle part 8.2061E-4 7 2282 7 6292
organelle lumen 3.2392E-3 7 660 4 6292
intracellular organelle lumen 3.2392E-3 7 660 4 6292
membrane-enclosed lumen 4.0336E-3 7 700 4 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear mRNA splicing, via spliceosome 1.9283E-13 7 99 7 6292
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.0734E-13 7 100 7 6292
RNA splicing, via transesterification reactions 3.3775E-13 7 107 7 6292
RNA splicing 1.5265E-12 7 132 7 6292
mRNA processing 5.0409E-12 7 156 7 6292
mRNA metabolic process 4.6273E-11 7 213 7 6292
RNA processing 2.7815E-9 7 380 7 6292
mRNA catabolic process 4.5236E-7 7 69 4 6292
RNA catabolic process 8.2409E-7 7 80 4 6292
RNA metabolic process 1.8079E-6 7 954 7 6292
gene expression 1.4468E-5 7 1283 7 6292
nucleic acid metabolic process 2.8759E-5 7 1415 7 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 5.8565E-5 7 1566 7 6292
cellular macromolecule catabolic process 9.7385E-5 7 265 4 6292
cellular nitrogen compound metabolic process 1.3822E-4 7 1770 7 6292
macromolecule catabolic process 1.4619E-4 7 294 4 6292
nitrogen compound metabolic process 1.5014E-4 7 1791 7 6292
cellular catabolic process 5.5642E-4 7 415 4 6292
cellular macromolecule metabolic process 8.282E-4 7 2285 7 6292
macromolecule metabolic process 1.0051E-3 7 2349 7 6292
catabolic process 1.1015E-3 7 496 4 6292
assembly of spliceosomal tri-snRNP 2.224E-3 7 2 1 6292
spliceosomal snRNP assembly 2.224E-3 7 2 1 6292
primary metabolic process 4.3588E-3 7 2896 7 6292
cellular metabolic process 6.026E-3 7 3033 7 6292
metabolic process 7.9792E-3 7 3157 7 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 2.5214E-7 7 367 6 6292
nucleic acid binding 8.7797E-6 7 666 6 6292
binding 4.326E-4 7 1294 6 6292
U6 snRNA binding 1.1125E-3 7 1 1 6292
snRNA binding 5.552E-3 7 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle