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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nucleolar ribonucleoprotein complex 1.5126E-13 8 72 7 6292
ribonucleoprotein complex 1.7384E-7 8 514 7 6292
macromolecular complex 4.9027E-4 8 1635 7 6292
nucleolus 1.8378E-3 8 211 3 6292
RENT complex 5.0773E-3 8 4 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA 3.5094E-14 8 59 7 6292
rRNA processing 9.6299E-12 8 128 7 6292
rRNA metabolic process 1.5649E-11 8 137 7 6292
ncRNA processing 3.8413E-10 8 215 7 6292
ncRNA metabolic process 1.3532E-9 8 257 7 6292
ribosome biogenesis 1.094E-8 8 346 7 6292
ribonucleoprotein complex biogenesis 1.8872E-8 8 374 7 6292
RNA processing 2.1096E-8 8 380 7 6292
RNA metabolic process 2.7241E-7 8 954 8 6292
cellular component biogenesis 1.3986E-6 8 694 7 6292
gene expression 2.9372E-6 8 1283 8 6292
nucleic acid metabolic process 6.4427E-6 8 1415 8 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.4527E-5 8 1566 8 6292
cellular nitrogen compound metabolic process 3.8773E-5 8 1770 8 6292
nitrogen compound metabolic process 4.2618E-5 8 1791 8 6292
cellular macromolecule metabolic process 3.0018E-4 8 2285 8 6292
macromolecule metabolic process 3.7455E-4 8 2349 8 6292
primary metabolic process 2.0036E-3 8 2896 8 6292
cellular metabolic process 2.9013E-3 8 3033 8 6292
rRNA transcription 3.8101E-3 8 3 1 6292
metabolic process 3.9991E-3 8 3157 8 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snoRNA binding 2.7157E-16 8 31 7 6292
RNA binding 1.6533E-8 8 367 7 6292
nucleic acid binding 1.0515E-6 8 666 7 6292
binding 1.0087E-4 8 1294 7 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle