| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.463695909396] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| MCD4 |
|
|
|
| PFA3 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| fungal-type vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| lytic vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| storage vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein amino acid lipidation | 6.6999E-5 | 2 | 52 | 2 | 6292 |
| lipoprotein metabolic process | 6.6999E-5 | 2 | 52 | 2 | 6292 |
| lipoprotein biosynthetic process | 6.6999E-5 | 2 | 52 | 2 | 6292 |
| purine ribonucleotide transport | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| ATP transport | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| adenine nucleotide transport | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| purine nucleotide transport | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| protein palmitoylation | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| protein amino acid palmitoylation | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| nucleotide transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
| vacuole fusion, non-autophagic | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| GPI anchor biosynthetic process | 8.8811E-3 | 2 | 28 | 1 | 6292 |
| phosphoinositide biosynthetic process | 9.1975E-3 | 2 | 29 | 1 | 6292 |
| GPI anchor metabolic process | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mannose-ethanolamine phosphotransferase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| protein-cysteine S-palmitoleyltransferase activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| protein-cysteine S-acyltransferase activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| palmitoyltransferase activity | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| S-acyltransferase activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| phosphotransferase activity, for other substituted phosphate groups | 6.0308E-3 | 2 | 19 | 1 | 6292 |