| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.477564742804] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| trans-Golgi network | 3.9411E-6 | 2 | 13 | 2 | 6292 |
| Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
| integral to Golgi membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| intrinsic to Golgi membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| post-Golgi vesicle-mediated transport | 1.151E-4 | 2 | 68 | 2 | 6292 |
| Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| Golgi to plasma membrane protein transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| intracellular protein transport | 1.6363E-3 | 2 | 255 | 2 | 6292 |
| protein transport | 1.8213E-3 | 2 | 269 | 2 | 6292 |
| establishment of protein localization | 1.8485E-3 | 2 | 271 | 2 | 6292 |
| cellular protein localization | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| cellular macromolecule localization | 2.0305E-3 | 2 | 284 | 2 | 6292 |
| phospholipid translocation | 2.224E-3 | 2 | 7 | 1 | 6292 |
| lipid translocation | 2.224E-3 | 2 | 7 | 1 | 6292 |
| protein localization | 2.3118E-3 | 2 | 303 | 2 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| Golgi to endosome transport | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| phospholipid transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
| macromolecule localization | 3.9717E-3 | 2 | 397 | 2 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
| Golgi to plasma membrane transport | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phospholipid-translocating ATPase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| phospholipid transporter activity | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| lipid transporter activity | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| ATPase activity, coupled to transmembrane movement of ions | 9.1975E-3 | 2 | 29 | 1 | 6292 |