From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.491909722146] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | 3.811E-3 | 2 | 12 | 1 | 6292 |
proton-transporting ATP synthase complex, coupling factor F(o) | 3.811E-3 | 2 | 12 | 1 | 6292 |
mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
proton-transporting two-sector ATPase complex, proton-transporting domain | 6.0308E-3 | 2 | 19 | 1 | 6292 |
mitochondrial proton-transporting ATP synthase complex | 6.3477E-3 | 2 | 20 | 1 | 6292 |
proton-transporting ATP synthase complex | 6.3477E-3 | 2 | 20 | 1 | 6292 |
envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
copper chaperone activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
metallochaperone activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
copper ion binding | 2.859E-3 | 2 | 9 | 1 | 6292 |
peroxiredoxin activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
thioredoxin peroxidase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
hydrogen ion transporting ATP synthase activity, rotational mechanism | 4.7627E-3 | 2 | 15 | 1 | 6292 |
peroxidase activity | 6.3477E-3 | 2 | 20 | 1 | 6292 |
oxidoreductase activity, acting on peroxide as acceptor | 6.3477E-3 | 2 | 20 | 1 | 6292 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.2981E-3 | 2 | 23 | 1 | 6292 |
transition metal ion binding | 7.6148E-3 | 2 | 24 | 1 | 6292 |
antioxidant activity | 7.9314E-3 | 2 | 25 | 1 | 6292 |