From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.501317880276] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
COX11 |
|
|
|
SCO1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mitochondrial inner membrane | 7.6048E-4 | 2 | 174 | 2 | 6292 |
organelle inner membrane | 8.5997E-4 | 2 | 185 | 2 | 6292 |
mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein complex assembly | 6.0304E-4 | 2 | 155 | 2 | 6292 |
protein complex biogenesis | 6.0304E-4 | 2 | 155 | 2 | 6292 |
macromolecular complex assembly | 1.9877E-3 | 2 | 281 | 2 | 6292 |
macromolecular complex subunit organization | 3.2108E-3 | 2 | 357 | 2 | 6292 |
cellular component assembly | 3.7349E-3 | 2 | 385 | 2 | 6292 |
copper ion transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
copper ion binding | 1.819E-6 | 2 | 9 | 2 | 6292 |
transition metal ion binding | 1.3945E-5 | 2 | 24 | 2 | 6292 |
metal ion binding | 7.5032E-5 | 2 | 55 | 2 | 6292 |
ion binding | 7.7811E-5 | 2 | 56 | 2 | 6292 |
cation binding | 7.7811E-5 | 2 | 56 | 2 | 6292 |
thioredoxin peroxidase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
peroxiredoxin activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
peroxidase activity | 6.3477E-3 | 2 | 20 | 1 | 6292 |
oxidoreductase activity, acting on peroxide as acceptor | 6.3477E-3 | 2 | 20 | 1 | 6292 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.2981E-3 | 2 | 23 | 1 | 6292 |
antioxidant activity | 7.9314E-3 | 2 | 25 | 1 | 6292 |