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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.521372849417]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
PZF1
  • transcription factor complex
    		•
  • transcription initiation from RNA polymerase III promoter
    		•
  • RNA polymerase III transcription factor activity
    		•
    TFC6
  • transcription factor TFIIIC complex
    		•
  • transcription initiation from RNA polymerase III promoter
    		•
  • RNA polymerase III transcription factor activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    transcription factor complex 1.2556E-4 2 71 2 6292
    nucleoplasm part 1.5102E-3 2 245 2 6292
    nucleoplasm 1.7541E-3 2 264 2 6292
    transcription factor TFIIIC complex 1.9064E-3 2 6 1 6292
    nuclear lumen 5.1728E-3 2 453 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    transcription initiation from RNA polymerase III promoter 2.779E-6 2 11 2 6292
    transcription from RNA polymerase III promoter 3.552E-5 2 38 2 6292
    transcription initiation 8.3521E-5 2 58 2 6292
    protein complex assembly 6.0304E-4 2 155 2 6292
    protein complex biogenesis 6.0304E-4 2 155 2 6292
    macromolecular complex assembly 1.9877E-3 2 281 2 6292
    macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
    cellular component assembly 3.7349E-3 2 385 2 6292
    transcription, DNA-dependent 6.3792E-3 2 503 2 6292
    RNA biosynthetic process 6.5067E-3 2 508 2 6292
    transcription 7.6839E-3 2 552 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    RNA polymerase III transcription factor activity 2.2737E-6 2 10 2 6292
    transcription regulator activity 2.8947E-3 2 339 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle