| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.5589954028] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| intrinsic to Golgi membrane | 6.0632E-6 | 2 | 16 | 2 | 6292 |
| integral to Golgi membrane | 6.0632E-6 | 2 | 16 | 2 | 6292 |
| Golgi membrane | 5.9419E-5 | 2 | 49 | 2 | 6292 |
| integral to organelle membrane | 1.051E-4 | 2 | 65 | 2 | 6292 |
| intrinsic to organelle membrane | 1.151E-4 | 2 | 68 | 2 | 6292 |
| Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| endoplasmic reticulum membrane | 4.4352E-4 | 2 | 133 | 2 | 6292 |
| endoplasmic reticulum part | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| subsynaptic reticulum | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
| nuclear membrane-endoplasmic reticulum network | 1.3539E-3 | 2 | 232 | 2 | 6292 |
| integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
| intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
| integral to endoplasmic reticulum membrane | 9.8303E-3 | 2 | 31 | 1 | 6292 |
| ER to Golgi transport vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
| intrinsic to endoplasmic reticulum membrane | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| regulation of secretion | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| regulation of exocytosis | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| regulation of cellular localization | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| regulation of vesicle-mediated transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| phosphoinositide dephosphorylation | 2.224E-3 | 2 | 7 | 1 | 6292 |
| phospholipid dephosphorylation | 2.224E-3 | 2 | 7 | 1 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| regulation of transport | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| regulation of localization | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| phosphoinositide-mediated signaling | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| inositol lipid-mediated signaling | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| lipid modification | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
| second-messenger-mediated signaling | 9.5139E-3 | 2 | 30 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| inositol or phosphatidylinositol phosphatase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |