| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.586022974521] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| proteasome complex | 5.6994E-5 | 2 | 48 | 2 | 6292 |
| proteasome accessory complex | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| proteasome regulatory particle | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein deubiquitination | 1.0611E-5 | 2 | 21 | 2 | 6292 |
| protein modification by small protein removal | 2.0514E-5 | 2 | 29 | 2 | 6292 |
| protein modification by small protein conjugation or removal | 3.2544E-4 | 2 | 114 | 2 | 6292 |
| post-translational protein modification | 3.2108E-3 | 2 | 357 | 2 | 6292 |
| regulation of DNA replication | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
| regulation of DNA metabolic process | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ubiquitin-specific protease activity | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| small conjugating protein-specific protease activity | 1.1672E-5 | 2 | 22 | 2 | 6292 |
| cysteine-type peptidase activity | 2.5061E-5 | 2 | 32 | 2 | 6292 |
| peptidase activity, acting on L-amino acid peptides | 2.256E-4 | 2 | 95 | 2 | 6292 |
| ubiquitin thiolesterase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| peptidase activity | 9.2646E-4 | 2 | 192 | 2 | 6292 |
| thiolester hydrolase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |