| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.596541828058] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mRNA cleavage factor complex | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
| nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
| Set1C/COMPASS complex | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| methyltransferase complex | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| histone methyltransferase complex | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| mRNA cleavage and polyadenylation specificity factor complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mRNA 3'-end processing | 2.3495E-5 | 2 | 31 | 2 | 6292 |
| RNA 3'-end processing | 4.3504E-5 | 2 | 42 | 2 | 6292 |
| mRNA processing | 6.1087E-4 | 2 | 156 | 2 | 6292 |
| mRNA metabolic process | 1.1408E-3 | 2 | 213 | 2 | 6292 |
| snoRNA 3'-end processing | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| snoRNA processing | 2.224E-3 | 2 | 7 | 1 | 6292 |
| termination of RNA polymerase II transcription, poly(A)-independent | 2.859E-3 | 2 | 9 | 1 | 6292 |
| termination of RNA polymerase II transcription, poly(A)-coupled | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| RNA processing | 3.6384E-3 | 2 | 380 | 2 | 6292 |
| ncRNA 3'-end processing | 3.811E-3 | 2 | 12 | 1 | 6292 |
| snoRNA metabolic process | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| termination of RNA polymerase II transcription | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| mRNA polyadenylation | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| histone methylation | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| transcription termination | 6.6645E-3 | 2 | 21 | 1 | 6292 |
| protein amino acid alkylation | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| protein amino acid methylation | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| mRNA cleavage | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| RNA polyadenylation | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein heterodimerization activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| protein dimerization activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| histone methyltransferase activity (H3-K4 specific) | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| histone methyltransferase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| histone-lysine N-methyltransferase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| lysine N-methyltransferase activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| protein-lysine N-methyltransferase activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| protein methyltransferase activity | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| N-methyltransferase activity | 7.9314E-3 | 2 | 25 | 1 | 6292 |