| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.657203606133] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitochondrial inner membrane | 7.6048E-4 | 2 | 174 | 2 | 6292 |
| organelle inner membrane | 8.5997E-4 | 2 | 185 | 2 | 6292 |
| mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
| mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| anion transport | 1.5158E-5 | 2 | 25 | 2 | 6292 |
| carboxylic acid transport | 8.6451E-5 | 2 | 59 | 2 | 6292 |
| organic acid transport | 8.9432E-5 | 2 | 60 | 2 | 6292 |
| mitochondrial citrate transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| oxaloacetate transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| citrate transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| tricarboxylic acid transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| dicarboxylic acid transport | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| sulfate transport | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| organic anion transport | 2.224E-3 | 2 | 7 | 1 | 6292 |
| inorganic anion transport | 5.7138E-3 | 2 | 18 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| secondary active transmembrane transporter activity | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| secondary active sulfate transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| oxaloacetate transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| oxaloacetate secondary active transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| active transmembrane transporter activity | 3.6682E-4 | 2 | 121 | 2 | 6292 |
| tricarboxylate secondary active transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| dicarboxylic acid transmembrane transporter activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| sulfate transmembrane transporter activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
| transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
| inorganic anion transmembrane transporter activity | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| anion transmembrane transporter activity | 6.6645E-3 | 2 | 21 | 1 | 6292 |