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Protein Overview: GDB1

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #30 Asynchronous Prep6-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data GDB1 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..110] PSI-BLAST 87.522879 Neopullulanase, central domain; Neopullulanase
2 View Details [111..444] PSI-BLAST 87.522879 Neopullulanase, central domain; Neopullulanase
3 View Details [445..539] deduced N/A No confident structure predictions are available.
4 View Details [540..812] MSA 1.009911 View MSA. No confident structure predictions are available.
5 View Details [813..927] deduced N/A No confident structure predictions are available.
6 View Details [928..1536] MSA 31.092941 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • hydrolase activity, hydrolyzing O-glycosyl compounds
  • 4.55801959095491 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
  • 4.29108420555514 bayes_pls_golite062009
  • hydrolase activity
  • 3.3484406095165 bayes_pls_golite062009
  • glucosidase activity
  • 1.92306554001182 bayes_pls_golite062009
  • catalytic activity
  • 1.85569074294201 bayes_pls_golite062009
  • cation transmembrane transporter activity
  • 1.69105818607475 bayes_pls_golite062009
  • alpha-amylase activity
  • 1.42264105957213 bayes_pls_golite062009
  • ion transmembrane transporter activity
  • 1.39709424453076 bayes_pls_golite062009
  • amylase activity
  • 1.37652764526134 bayes_pls_golite062009
  • ligand-gated channel activity
  • 1.05409109078129 bayes_pls_golite062009
  • ligand-gated ion channel activity
  • 1.05409109078129 bayes_pls_golite062009
  • cation channel activity
  • 1.05200514582216 bayes_pls_golite062009
  • gated channel activity
  • 0.9985637228196 bayes_pls_golite062009
  • phosphorylase activity
  • 0.99159540154441 bayes_pls_golite062009
  • ion channel activity
  • 0.90214915215542 bayes_pls_golite062009
  • oxidoreductase activity
  • 0.88505980389015 bayes_pls_golite062009
  • hexosaminidase activity
  • 0.763360027922833 bayes_pls_golite062009
  • substrate-specific channel activity
  • 0.7468694373149 bayes_pls_golite062009
  • passive transmembrane transporter activity
  • 0.72022399139884 bayes_pls_golite062009
  • channel activity
  • 0.72022399139884 bayes_pls_golite062009
  • carbohydrate binding
  • 0.66542913126194 bayes_pls_golite062009
  • binding
  • 0.63693798355947 bayes_pls_golite062009
  • voltage-gated cation channel activity
  • 0.607543065522144 bayes_pls_golite062009
  • sugar binding
  • 0.52048704356718 bayes_pls_golite062009
  • alpha-glucosidase activity
  • 0.502835520523619 bayes_pls_golite062009
  • chitinase activity
  • 0.500233744020165 bayes_pls_golite062009
  • voltage-gated channel activity
  • 0.469037239588056 bayes_pls_golite062009
  • voltage-gated ion channel activity
  • 0.432338683948607 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
  • 0.266938437560648 bayes_pls_golite062009
  • beta-N-acetylhexosaminidase activity
  • 0.263065978664289 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • hydrolase activity, hydrolyzing O-glycosyl compounds
  • 4.01411696184454 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
  • 3.75569329586306 bayes_pls_golite062009
  • hydrolase activity
  • 3.09437610147873 bayes_pls_golite062009
  • catalytic activity
  • 1.71182498300466 bayes_pls_golite062009
  • cation transmembrane transporter activity
  • 1.47858966054862 bayes_pls_golite062009
  • glucosidase activity
  • 1.43091142767978 bayes_pls_golite062009
  • ion transmembrane transporter activity
  • 1.20132615047656 bayes_pls_golite062009
  • alpha-amylase activity
  • 0.941347702703202 bayes_pls_golite062009
  • oxidoreductase activity
  • 0.903068069820964 bayes_pls_golite062009
  • amylase activity
  • 0.891520642245226 bayes_pls_golite062009
  • phosphorylase activity
  • 0.800923094114415 bayes_pls_golite062009
  • binding
  • 0.714691332987919 bayes_pls_golite062009
  • cation channel activity
  • 0.687664373378757 bayes_pls_golite062009
  • ligand-gated channel activity
  • 0.644476237009351 bayes_pls_golite062009
  • ligand-gated ion channel activity
  • 0.644476237009351 bayes_pls_golite062009
  • gated channel activity
  • 0.639690382658596 bayes_pls_golite062009
  • ion channel activity
  • 0.554120053171305 bayes_pls_golite062009
  • carbohydrate binding
  • 0.504948074246922 bayes_pls_golite062009
  • substrate-specific channel activity
  • 0.41159587344266 bayes_pls_golite062009
  • channel activity
  • 0.389778821252571 bayes_pls_golite062009
  • passive transmembrane transporter activity
  • 0.389778821252571 bayes_pls_golite062009
  • sugar binding
  • 0.358568008635262 bayes_pls_golite062009
  • hexosaminidase activity
  • 0.276754066333854 bayes_pls_golite062009
  • voltage-gated cation channel activity
  • 0.161734714032652 bayes_pls_golite062009
  • chitinase activity
  • 0.0470563383739831 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
  • 0.0442793643840943 bayes_pls_golite062009
  • voltage-gated channel activity
  • 0.0360180230561171 bayes_pls_golite062009
  • alpha-glucosidase activity
  • 0.0243149684125608 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • hydrolase activity, hydrolyzing O-glycosyl compounds
  • 3.49882811932206 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
  • 3.13521240810366 bayes_pls_golite062009
  • hydrolase activity
  • 2.32639760387397 bayes_pls_golite062009
  • trehalase activity
  • 1.57673904073206 bayes_pls_golite062009
  • catalytic activity
  • 1.16285856935495 bayes_pls_golite062009
  • binding
  • 1.09827656713171 bayes_pls_golite062009
  • alpha,alpha-trehalase activity
  • 0.711518852337884 bayes_pls_golite062009
  • phosphorylase activity
  • 0.60780059000187 bayes_pls_golite062009
  • protein binding
  • 0.31260719357226 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
  • 0.0683547784833305 bayes_pls_golite062009
    6 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.60

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle