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Protein Overview: SRD1

General Information:
Name(s) found: SRD1 / YCR018C [SGD]
Description(s) found:
Found 23 descriptions.
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  • Protein involved in the processing of pre-rRNA to mature rRNA; contains a C2/C2 zinc finger motif; srd1 mutation suppresses defects caused by the rrp1-1 mutation [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 221 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: rRNA processing [IGILink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYNNYDNSG SSFLTRVVKK SDMEKTLLLN REIDDWKSND KKKAYKERGR VYASCSFIEV  60
   61 SFSQIRAVDV EKKIENAEQL RDLTRNIVKN KTSSLNEITP SKNRVTSACN SERRTTSQEA 120
  121 NNLEGYHSCA QGTSRSASIT KKYSKKTTSR PKREKRQTIL PNGEIKECSK CKDTWTIQWR 180
  181 SGPDQNRELC SPCGLAYGKR LKKENEKKRQ AADKRIDRNN P

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details (MIPS) Mewes HW, et al. (2004) DRS1 GAR1 IFH1 NOP1 NPL3 NSR1 POP1 POP2 RAT1 RNT1 RRP3 SBP1 SNM1 SRD1 UTP10 UTP11 UTP13 UTP4 UTP5 UTP6 UTP7 UTP8 UTP9 YME2
    View Details Qiu et al. (2008) DRS1 NPL3 SRD1

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data SRD1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..139] deduced N/A No confident structure predictions are available.
    2 View Details [140..221] PSI-BLAST 17.045757 Erythroid transcription factor GATA-1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  2.90545037627165 bayes_pls_golite062009
  • DNA binding
    		•  2.60187443597685 bayes_pls_golite062009
  • binding
    		•  2.3712591616364 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.37049966873591 bayes_pls_golite062009
  • transcription factor activity
    		•  2.06400766265838 bayes_pls_golite062009
  • protein binding
    		•  1.16334132659733 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.09234758156492 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.01709689122918 bayes_pls_golite062009
  • transcription activator activity
    		•  0.84971806234869 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  0.66439028392158 bayes_pls_golite062009
  • transcription factor binding
    		•  0.66367552914256 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.10642958544072 bayes_pls_golite062009
  • catalytic activity
    		•  0.101795606736461 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.06728167026678 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle