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View Structure Prediction Details

Protein: ypt3
Organism: Schizosaccharomyces pombe
Length: 214 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ypt3.

Description E-value Query
Range		 Subject
Range
gi|49069954, gi|... - gi|71006264|ref|XP_757798.1| hypothetical protein UM01651.1 [Ustilago maydis 521], ref|XP_399266.1| ...
 230.0 [0..1] [213..1]
gi|134111857, gi... - gi|50258123|gb|EAL20817.1| hypothetical protein CNBE1790 [Cryptococcus neoformans var. neoformans B-...
 226.0 [0..1] [213..1]
gi|114675154 - gi|114675154|ref|XP_001147785.1| PREDICTED: similar to GTP-binding protein RAB11B [Pan troglodytes]
 225.0 [0..2] [214..133]
gi|89267988, gi|... - gi|89271367|emb|CAJ83815.1| RAB11B, member RAS oncogene family [Xenopus tropicalis], gi|89267988|emb...
gi|52078458, gi|... - gi|52078458|gb|AAH82421.1| LOC494642 protein [Xenopus laevis], gi|148237448|ref|NP_001087959.1| hypo...
 225.0 [0..2] [214..3]
gi|31324876 - gi|31324876|gb|AAP48704.1| rab11-2 [Limulus polyphemus]
 224.0 [0..2] [214..3]
gi|109081641 - gi|109081641|ref|XP_001103732.1| PREDICTED: similar to RAB11a, member RAS oncogene family [Macaca mu...
 223.0 [0..2] [212..91]
ENSPTRT00000019157 - null
tr|G3I5Q9|G3I5Q9... - Ras-related protein Rab-11B OS=Cricetulus griseus GN=I79_018814 PE=3 SV=1
RB11B_RAT - Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=1 SV=4
gi|90085246 - gi|90085246|dbj|BAE91364.1| unnamed protein product [Macaca fascicularis]
gi|226529709, gi... - gi|226529709|ref|NP_001142168.1| hypothetical protein LOC100274335 [Zea mays], gi|194707448|gb|ACF87...
gi|61355645 - gi|61355645|gb|AAX41161.1| RAB11B member RAS oncogene family [synthetic construct]
RB11B_BOVIN - Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3
CCDS12201.1_1 - null
gi|109123235 - gi|109123235|ref|XP_001093925.1| PREDICTED: RAB11B, member RAS oncogene family [Macaca mulatta]
RAB11B - RAB11B, member RAS oncogene family
 223.0 [0..2] [214..3]
RB11B_MOUSE - Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3
 223.0 [0..2] [214..3]
gi|60302752, gi|... - gi|60302752|ref|NP_001012569.1| RAB11B, member RAS oncogene family [Gallus gallus], gi|60098771|emb|...
gi|126323801 - gi|126323801|ref|XP_001376337.1| PREDICTED: hypothetical protein [Monodelphis domestica]
gi|224087229 - gi|224087229|ref|XP_002190133.1| PREDICTED: RAB11B, member RAS oncogene family [Taeniopygia guttata]
 223.0 [0..2] [214..3]

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Predicted Domain #1
Region A:
Residues: [1-214] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCQEDEYDYL FKTVLIGDSG VGKSNLLMRF TRNEFNIESK STIGVEFATR NIVLDNKKIK  60
   61 AQIWDTAGQE RYRAITSAYY RGAVGALIVY DITKQSSFDN VGRWLKELRE HADSNIVIML 120
  121 VGNKTDLLHL RAVSTEEAQA FAAENNLSFI ETSAMDASNV EEAFQTVLTE IFRIVSNRSL 180
  181 EAGDDGVHPT AGQTLNIAPT MNDLNKKKSS SQCC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.39794
Match: 2f9lA
Description: No description for 2f9lA was found.

Predicted functions:

Term Confidence Notes
GTPase activity 4.52394549632777 bayes_pls_golite062009
microtubule motor activity 4.51968578934603 bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism 4.26230696590213 bayes_pls_golite062009
structural constituent of ribosome 4.14187056198902 bayes_pls_golite062009
motor activity 4.04927796049806 bayes_pls_golite062009
hydrolase activity 3.63069754092699 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 3.35170865169069 bayes_pls_golite062009
actin binding 3.33639699088484 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.23143315078113 bayes_pls_golite062009
structural molecule activity 3.22453402481353 bayes_pls_golite062009
microfilament motor activity 3.17800963620802 bayes_pls_golite062009
signal recognition particle binding 3.10924684520019 bayes_pls_golite062009
transporter activity 3.10463051760206 bayes_pls_golite062009
transmembrane transporter activity 2.95886887664984 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
organic acid transmembrane transporter activity 2.67957846350199 bayes_pls_golite062009
carboxylic acid transmembrane transporter activity 2.67815672695824 bayes_pls_golite062009
tubulin binding 2.67743463093593 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
primary active transmembrane transporter activity 2.61775212528604 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 2.61467977505707 bayes_pls_golite062009
microtubule binding 2.59155206524122 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 2.57552435627908 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 2.57107347424517 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 2.57054427875021 bayes_pls_golite062009
nucleic acid binding 2.51683451033161 bayes_pls_golite062009
active transmembrane transporter activity 2.50494515048649 bayes_pls_golite062009
ATPase activity, coupled 2.43862163407966 bayes_pls_golite062009
cytoskeletal protein binding 2.4101693596493 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
G-protein coupled receptor activity 2.3505608190884 bayes_pls_golite062009
amine transmembrane transporter activity 2.29486577878686 bayes_pls_golite062009
actin filament binding 2.24723363507804 bayes_pls_golite062009
DNA binding 2.12258000781149 bayes_pls_golite062009
transcription regulator activity 2.09345198747025 bayes_pls_golite062009
ribonucleoprotein binding 2.04103162399905 bayes_pls_golite062009
substrate-specific transporter activity 1.91091452720653 bayes_pls_golite062009
guanyl nucleotide binding 1.89320355239381 bayes_pls_golite062009
guanyl ribonucleotide binding 1.88721318481223 bayes_pls_golite062009
GTP binding 1.87900088157196 bayes_pls_golite062009
1.86855842486607 bayes_pls_golite062009
purine ribonucleotide binding 1.85943679361938 bayes_pls_golite062009
ribonucleotide binding 1.85937484083653 bayes_pls_golite062009
purine nucleotide binding 1.8521191028835 bayes_pls_golite062009
nucleotide binding 1.84603132945448 bayes_pls_golite062009
kinase activity 1.80889641165674 bayes_pls_golite062009
protein transporter activity 1.71214667007262 bayes_pls_golite062009
helicase activity 1.70242731830224 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.60386625568858 bayes_pls_golite062009
amino acid transmembrane transporter activity 1.59627719545436 bayes_pls_golite062009
actin-dependent ATPase activity 1.58897222423517 bayes_pls_golite062009
ATP binding 1.5859264197035 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.56325751172863 bayes_pls_golite062009
adenyl ribonucleotide binding 1.55520429131224 bayes_pls_golite062009
adenyl nucleotide binding 1.53158018507951 bayes_pls_golite062009
GDP-dissociation inhibitor binding 1.53046363842187 bayes_pls_golite062009
apolipoprotein receptor activity 1.52496551152043 bayes_pls_golite062009
syntaxin-13 binding 1.52496551152043 bayes_pls_golite062009
apolipoprotein A-I binding 1.52496551152043 bayes_pls_golite062009
apolipoprotein A-I receptor activity 1.52496551152043 bayes_pls_golite062009
plus-end-directed microtubule motor activity 1.38366133153678 bayes_pls_golite062009
transmembrane receptor activity 1.26314334516725 bayes_pls_golite062009
protein binding 1.22129154759482 bayes_pls_golite062009
DNA-dependent ATPase activity 1.2155186842031 bayes_pls_golite062009
receptor activity 1.20313362488821 bayes_pls_golite062009
ATP-dependent helicase activity 1.19311444180077 bayes_pls_golite062009
purine NTP-dependent helicase activity 1.19311444180077 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.14475274823167 bayes_pls_golite062009
signal transducer activity 1.13474466330485 bayes_pls_golite062009
molecular transducer activity 1.13474466330485 bayes_pls_golite062009
peptidase activity 1.12876670227791 bayes_pls_golite062009
protein kinase activity 1.12864835254143 bayes_pls_golite062009
ADP binding 1.10601354993582 bayes_pls_golite062009
nucleotide kinase activity 1.10251779925246 bayes_pls_golite062009
beta-catenin binding 1.03146778136145 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
ion transmembrane transporter activity 0.977237423302079 bayes_pls_golite062009
DNA-directed DNA polymerase activity 0.971476020912368 bayes_pls_golite062009
structural constituent of muscle 0.960508657568442 bayes_pls_golite062009
DNA polymerase activity 0.928091843881235 bayes_pls_golite062009
GBD domain binding 0.914270985726459 bayes_pls_golite062009
transcription activator activity 0.889929694023098 bayes_pls_golite062009
transferase activity, transferring glycosyl groups 0.889480122725603 bayes_pls_golite062009
transcription factor activity 0.887108427603557 bayes_pls_golite062009
protein methyltransferase activity 0.876296121718575 bayes_pls_golite062009
transferase activity 0.871779313294914 bayes_pls_golite062009
structure-specific DNA binding 0.782430219754236 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.765442336337003 bayes_pls_golite062009
DNA helicase activity 0.72881469450553 bayes_pls_golite062009
protein-DNA loading ATPase activity 0.650964453464311 bayes_pls_golite062009
histone methyltransferase activity 0.63002958837536 bayes_pls_golite062009
cell surface binding 0.618263399939881 bayes_pls_golite062009
double-stranded DNA binding 0.6071273686445 bayes_pls_golite062009
ATP-dependent DNA helicase activity 0.5886142102548 bayes_pls_golite062009
cation transmembrane transporter activity 0.557919489256916 bayes_pls_golite062009
sequence-specific DNA binding 0.543891899378373 bayes_pls_golite062009
DNA clamp loader activity 0.543512707823441 bayes_pls_golite062009
protein transmembrane transporter activity 0.46552249844591 bayes_pls_golite062009
branched-chain aliphatic amino acid transmembrane transporter activity 0.442220326523999 bayes_pls_golite062009
monosaccharide transmembrane transporter activity 0.439781986921438 bayes_pls_golite062009
signal sequence binding 0.42240724331108 bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor 0.40217318916177 bayes_pls_golite062009
drug transmembrane transporter activity 0.38711726712063 bayes_pls_golite062009
protein serine/threonine kinase activity 0.345873656782869 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 0.305627755818843 bayes_pls_golite062009
peptide binding 0.304703625340488 bayes_pls_golite062009
myosin binding 0.274885859454447 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.243902356228423 bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism 0.20818362273204 bayes_pls_golite062009
RNA helicase activity 0.18426050934025 bayes_pls_golite062009
amino acid-transporting ATPase activity 0.147644650870465 bayes_pls_golite062009
RNA-dependent ATPase activity 0.14606996093053 bayes_pls_golite062009
amine-transporting ATPase activity 0.135455889967401 bayes_pls_golite062009
ATP-dependent RNA helicase activity 0.13050483816765 bayes_pls_golite062009
nucleobase, nucleoside, nucleotide kinase activity 0.12351419478929 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.123304946374679 bayes_pls_golite062009
minus-end directed microfilament motor activity 0.103268955687259 bayes_pls_golite062009
sterol transporter activity 0.0950944830037703 bayes_pls_golite062009
metal ion transmembrane transporter activity 0.0775601177068852 bayes_pls_golite062009
RNA binding 0.0693163519626152 bayes_pls_golite062009
structural constituent of cytoskeleton 0.0111338193708552 bayes_pls_golite062009
P-P-bond-hydrolysis-driven protein transmembrane transporter activity 0.00571427458217011 bayes_pls_golite062009
macromolecule transmembrane transporter activity 0.00571427458217011 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle