YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30683251, gi|...
Organism: Arabidopsis thaliana
Length: 667 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30683251, gi|....

Description E-value Query
Range		 Subject
Range
EF1A_CHICK - Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1
 558.0 [0..233] [667..1]

Back

Predicted Domain #1
Region A:
Residues: [1-147] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEAAAE PKEEIAKTQG LWRCAICTYD  60
   61 NVETMFVCDI CGVLRHPVAG NQSINKNTAP FKFDAPSPDD LVSNGLTSSK TGPKGSGDAS 120
  121 MRQKEKQDSV EQKPLKKGGD SSETSSR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.15
Match: 2cr8A
Description: Solution structure of the zf-RanBP domain of p53-binding protein Mdm4
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 3.20328928115433 bayes_pls_golite062009
binding 2.62755151093853 bayes_pls_golite062009
transcription regulator activity 1.4292604688881 bayes_pls_golite062009
protein binding 1.38597557698861 bayes_pls_golite062009
nucleic acid binding 1.29811494217842 bayes_pls_golite062009
DNA binding 1.02997453261872 bayes_pls_golite062009
transporter activity 1.02638225234439 bayes_pls_golite062009
transcription factor activity 0.74366964215867 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [148-232] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRHDKLDDKG GAGGIKSGKS LPKAKADMSN ETSSSSKYME TSESLTGTMN KMSLIGETEN  60
   61 SSDIKIRGPK SQSKHKPEEW MLLDK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.25
Match: 1cf7B
Description: Cell cycle transcription factor DP-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 4.46899851171648 bayes_pls_golite062009
structural molecule activity 4.22811609210387 bayes_pls_golite062009
transcription regulator activity 4.13436454849845 bayes_pls_golite062009
nucleic acid binding 3.70008591685767 bayes_pls_golite062009
DNA binding 3.62989551090051 bayes_pls_golite062009
binding 3.37660003833383 bayes_pls_golite062009
transcription factor activity 3.18366984273735 bayes_pls_golite062009
RNA binding 2.57915942568691 bayes_pls_golite062009
transcription repressor activity 2.13838000453063 bayes_pls_golite062009
sequence-specific DNA binding 1.57391998520453 bayes_pls_golite062009
transcription activator activity 1.45104950571349 bayes_pls_golite062009
mRNA binding 1.03970887182906 bayes_pls_golite062009
RNA polymerase II transcription factor activity 1.01831614309793 bayes_pls_golite062009
protein binding 0.726445167461826 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.281229260644949 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 0.254540961816301 bayes_pls_golite062009
signal transducer activity 0.222627259355176 bayes_pls_golite062009
molecular transducer activity 0.222627259355176 bayes_pls_golite062009
hydrolase activity 0.20695163916851 bayes_pls_golite062009
receptor binding 0.158993027578482 bayes_pls_golite062009
transferase activity 0.10058871838551 bayes_pls_golite062009
transcription factor binding 0.0307736199991748 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [233-667] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESDALSQLNL AIVGHVDSGK STLSGRLLHL LGRISQKQMH KYEKEAKLQG KGSFAYAWAL  60
   61 DESAEERERG ITMTVAVAYF NSKRHHVVLL DSPGHKDFVP NMIAGATQAD AAILVIDASV 120
  121 GAFEAGFDNL KGQTREHARV LRGFGVEQVI VAINKMDIVG YSKERFDLIK QHVGSFLQSC 180
  181 RFKDSSLTWI PLSAMENQNL VAAPSDNRLS SWYQGPCLLD AVDSVKSPDR DVSKPLLMPI 240
  241 CDAVRSTSQG QVSACGKLEA GAVRPGSKVM VMPSGDQGTI RSLERDSQAC TIARAGDNVA 300
  301 LALQGIDANQ VMAGDVLCHP DFPVSVATHL ELMVLVLEGA TPILLGSQLE FHVHHAKEAA 360
  361 TVVKLVAMLD PKTGQPTKKS PRCLTAKQSA MLEVSLQNPV CVETFSESRA LGRVFLRSSG 420
  421 RTVAMGKVTR IIQDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 155.0
Match: 1f60A
Description: Elongation factor eEF-1alpha, domain 2; Elongation factor eEF-1alpha, C-terminal domain; Elongation factor eEF-1alpha, N-terminal (G) domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation elongation factor activity 8.90683166637832 bayes_pls_golite062009
translation factor activity, nucleic acid binding 4.8378725567094 bayes_pls_golite062009
translation regulator activity 4.79814772079421 bayes_pls_golite062009
structural constituent of ribosome 4.56509805974548 bayes_pls_golite062009
structural molecule activity 3.58406348799895 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
transporter activity 2.58140740499725 bayes_pls_golite062009
hydrolase activity 2.55157966585974 bayes_pls_golite062009
translation release factor activity 2.49148102494524 bayes_pls_golite062009
translation termination factor activity 2.46464632547226 bayes_pls_golite062009
transmembrane transporter activity 2.39695871109024 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
RNA binding 2.29590582680214 bayes_pls_golite062009
ATPase activity, coupled 2.18396165590908 bayes_pls_golite062009
actin filament binding 2.1683792904715 bayes_pls_golite062009
2.15810909411803 bayes_pls_golite062009
motor activity 2.11140484670646 bayes_pls_golite062009
nucleic acid binding 1.49633029954726 bayes_pls_golite062009
actin binding 1.42666717383185 bayes_pls_golite062009
cytoskeletal protein binding 1.40488517180956 bayes_pls_golite062009
microtubule motor activity 1.35938517416356 bayes_pls_golite062009
microfilament motor activity 1.33993901826495 bayes_pls_golite062009
substrate-specific transporter activity 1.29730375126024 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
transcription regulator activity 0.989226939888218 bayes_pls_golite062009
ATP binding 0.98146619596929 bayes_pls_golite062009
DNA binding 0.967303417236485 bayes_pls_golite062009
adenyl ribonucleotide binding 0.949788783884952 bayes_pls_golite062009
adenyl nucleotide binding 0.931486373329219 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.906554174337376 bayes_pls_golite062009
protein methyltransferase activity 0.876296121718575 bayes_pls_golite062009
mRNA binding 0.76699944561918 bayes_pls_golite062009
peptidyltransferase activity 0.705667095586631 bayes_pls_golite062009
kinase activity 0.691112783105676 bayes_pls_golite062009
histone methyltransferase activity 0.63002958837536 bayes_pls_golite062009
RNA helicase activity 0.6022754485555 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.499834566483656 bayes_pls_golite062009
GTPase activity 0.437665353870877 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
ion transmembrane transporter activity 0.355466224802969 bayes_pls_golite062009
anion transmembrane-transporting ATPase activity 0.353150780751661 bayes_pls_golite062009
guanyl nucleotide binding 0.296406132096546 bayes_pls_golite062009
GTP binding 0.295705904888768 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
guanyl ribonucleotide binding 0.29028316917561 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
ribonuclease activity 0.222424272323909 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
anion transmembrane transporter activity 0.14873140406343 bayes_pls_golite062009
inorganic anion transmembrane transporter activity 0.12168417344278 bayes_pls_golite062009
helicase activity 0.0775311459068899 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 0.0716139935283535 bayes_pls_golite062009
transcription factor activity 0.0434163635422169 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.0430764033739892 bayes_pls_golite062009
protein transporter activity 0.0397092337273124 bayes_pls_golite062009
protein kinase activity 0.0364322017534667 bayes_pls_golite062009
cation transmembrane transporter activity 0.0254369227200564 bayes_pls_golite062009
peptide transporter activity 0.0135927378126404 bayes_pls_golite062009
signal sequence binding 6.53725193420218E-4 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle