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View Protein Complex Details

Complex Overview

From Publication: Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3.
Notes: This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Nop13. The topolgies of protein complexes in this experiment are unknown.
Complex Size: 10 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 5.963E-11 10 211 8 6292
nuclear lumen 2.6926E-8 10 453 8 6292
organelle lumen 5.2324E-7 10 660 8 6292
intracellular organelle lumen 5.2324E-7 10 660 8 6292
membrane-enclosed lumen 8.2941E-7 10 700 8 6292
non-membrane-bounded organelle 9.5787E-6 10 959 8 6292
intracellular non-membrane-bounded organelle 9.5787E-6 10 959 8 6292
nuclear part 2.8079E-5 10 1103 8 6292
nuclear outer membrane 2.7608E-4 10 86 3 6292
nuclear membrane 3.9408E-4 10 97 3 6292
outer membrane 2.3071E-3 10 178 3 6292
organelle outer membrane 2.3071E-3 10 178 3 6292
nucleus 2.7794E-3 10 2041 8 6292
nuclear envelope 3.1727E-3 10 199 3 6292
nuclear membrane-endoplasmic reticulum network 4.8992E-3 10 232 3 6292
organelle part 6.1675E-3 10 2282 8 6292
intracellular organelle part 6.1675E-3 10 2282 8 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 3.1586E-9 10 346 8 6292
ribonucleoprotein complex biogenesis 5.8737E-9 10 374 8 6292
cellular component biogenesis 7.7539E-7 10 694 8 6292
ribosomal large subunit biogenesis 2.0798E-6 10 65 4 6292
GTP biosynthetic process 2.2737E-6 10 2 2 6292
GTP metabolic process 4.7546E-5 10 7 2 6292
purine ribonucleoside triphosphate biosynthetic process 5.1639E-4 10 22 2 6292
purine nucleoside triphosphate biosynthetic process 5.1639E-4 10 22 2 6292
ribonucleoside triphosphate biosynthetic process 6.1594E-4 10 24 2 6292
purine ribonucleoside triphosphate metabolic process 7.8132E-4 10 27 2 6292
purine nucleoside triphosphate metabolic process 7.8132E-4 10 27 2 6292
nucleoside triphosphate biosynthetic process 7.8132E-4 10 27 2 6292
rRNA processing 8.8893E-4 10 128 3 6292
ribonucleoside triphosphate metabolic process 9.0222E-4 10 29 2 6292
rRNA metabolic process 1.0834E-3 10 137 3 6292
nucleoside triphosphate metabolic process 1.2414E-3 10 34 2 6292
ribosomal large subunit assembly 1.8038E-3 10 41 2 6292
purine ribonucleotide biosynthetic process 1.8923E-3 10 42 2 6292
ribonucleotide biosynthetic process 2.1703E-3 10 45 2 6292
purine nucleotide biosynthetic process 2.5693E-3 10 49 2 6292
purine ribonucleotide metabolic process 2.8897E-3 10 52 2 6292
ribosomal subunit assembly 3.228E-3 10 55 2 6292
ribonucleotide metabolic process 3.228E-3 10 55 2 6292
purine nucleotide metabolic process 3.584E-3 10 58 2 6292
maturation of SSU-rRNA 3.7066E-3 10 59 2 6292
ncRNA processing 3.9518E-3 10 215 3 6292
ribosome assembly 4.3489E-3 10 64 2 6292
organelle assembly 5.0393E-3 10 69 2 6292
nucleotide biosynthetic process 5.1831E-3 10 70 2 6292
ncRNA metabolic process 6.5282E-3 10 257 3 6292
regulation of transcription, mating-type specific 7.9239E-3 10 5 1 6292
cell proliferation 7.9239E-3 10 5 1 6292
nucleobase, nucleoside, nucleotide and nucleic acid biosynthetic process 8.4509E-3 10 90 2 6292
nucleobase, nucleoside and nucleotide biosynthetic process 8.4509E-3 10 90 2 6292
ribonucleoprotein complex assembly 8.8178E-3 10 92 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

IMP dehydrogenase activity 6.8153E-6 10 3 2 6292
ATP-dependent RNA helicase activity 8.4071E-4 10 28 2 6292
RNA-dependent ATPase activity 9.0222E-4 10 29 2 6292
RNA helicase activity 1.8923E-3 10 42 2 6292
ATP-dependent helicase activity 2.4666E-3 10 48 2 6292
purine NTP-dependent helicase activity 2.4666E-3 10 48 2 6292
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 5.6259E-3 10 73 2 6292
oxidoreductase activity, acting on CH-OH group of donors 6.8891E-3 10 81 2 6292
helicase activity 7.2234E-3 10 83 2 6292
rRNA primary transcript binding 7.9239E-3 10 5 1 6292

YRC Informatics Platform - Version 3.0
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