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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 1.7494E-5 6 211 4 6292
nuclear lumen 3.5395E-4 6 453 4 6292
non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
intracellular non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
organelle lumen 1.5136E-3 6 660 4 6292
intracellular organelle lumen 1.5136E-3 6 660 4 6292
small nucleolar ribonucleoprotein complex 1.8804E-3 6 72 2 6292
membrane-enclosed lumen 1.8952E-3 6 700 4 6292
ribonucleoprotein complex 8.9879E-3 6 514 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 2.6536E-8 6 346 6 6292
ribonucleoprotein complex biogenesis 4.2465E-8 6 374 6 6292
cellular component biogenesis 1.7662E-6 6 694 6 6292
rRNA processing 2.3759E-6 6 128 4 6292
rRNA metabolic process 3.1205E-6 6 137 4 6292
maturation of SSU-rRNA 1.5357E-5 6 59 3 6292
ncRNA processing 1.8849E-5 6 215 4 6292
ncRNA metabolic process 3.8238E-5 6 257 4 6292
RNA processing 1.7827E-4 6 380 4 6292
ribosomal large subunit biogenesis 1.5348E-3 6 65 2 6292
ncRNA 5'-end processing 2.8585E-3 6 3 1 6292
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.8585E-3 6 3 1 6292
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.8585E-3 6 3 1 6292
rRNA 5'-end processing 2.8585E-3 6 3 1 6292
RNA 5'-end processing 2.8585E-3 6 3 1 6292
maturation of 5.8S rRNA 3.8098E-3 6 4 1 6292
cleavage involved in rRNA processing 3.8098E-3 6 4 1 6292
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.8098E-3 6 4 1 6292
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.8098E-3 6 4 1 6292
endonucleolytic cleavage involved in rRNA processing 3.8098E-3 6 4 1 6292
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.8098E-3 6 4 1 6292
RNA metabolic process 6.0989E-3 6 954 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 1.5555E-4 6 367 4 6292
snoRNA binding 3.4811E-4 6 31 2 6292
nucleic acid binding 1.5669E-3 6 666 4 6292
binding 1.819E-3 6 1294 5 6292
5S rRNA binding 1.9064E-3 6 2 1 6292
rRNA primary transcript binding 4.7604E-3 6 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle