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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
intracellular non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
cytosolic ribosome 1.3411E-4 7 101 3 6292
90S preribosome 1.4316E-4 7 17 2 6292
cytosolic part 2.352E-4 7 122 3 6292
preribosome 5.8524E-4 7 34 2 6292
cytosolic small ribosomal subunit 7.3181E-4 7 38 2 6292
ribosomal subunit 7.7712E-4 7 183 3 6292
nucleolus 1.1777E-3 7 211 3 6292
ribonucleoprotein complex 1.2617E-3 7 514 4 6292
small ribosomal subunit 2.6853E-3 7 73 2 6292
cytosol 2.7813E-3 7 284 3 6292
ribosome 2.9533E-3 7 290 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

gene expression 1.4468E-5 7 1283 7 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8.2282E-5 7 13 2 6292
rRNA processing 2.7117E-4 7 128 3 6292
ribosome biogenesis 2.7556E-4 7 346 4 6292
rRNA metabolic process 3.3156E-4 7 137 3 6292
ribonucleoprotein complex biogenesis 3.725E-4 7 374 4 6292
translation 3.8026E-4 7 376 4 6292
cellular macromolecule metabolic process 8.282E-4 7 2285 7 6292
macromolecule metabolic process 1.0051E-3 7 2349 7 6292
ncRNA processing 1.2438E-3 7 215 3 6292
regulation of translation 1.6447E-3 7 57 2 6292
maturation of SSU-rRNA 1.7614E-3 7 59 2 6292
posttranscriptional regulation of gene expression 1.8819E-3 7 61 2 6292
ncRNA metabolic process 2.0862E-3 7 257 3 6292
regulation of cellular protein metabolic process 2.3339E-3 7 68 2 6292
regulation of protein metabolic process 2.7584E-3 7 74 2 6292
cellular macromolecule biosynthetic process 3.5479E-3 7 1187 5 6292
macromolecule biosynthetic process 3.5757E-3 7 1189 5 6292
cellular component biogenesis 3.9065E-3 7 694 4 6292
primary metabolic process 4.3588E-3 7 2896 7 6292
regulation of transcription, mating-type specific 5.552E-3 7 5 1 6292
cellular metabolic process 6.026E-3 7 3033 7 6292
RNA processing 6.3721E-3 7 380 3 6292
metabolic process 7.9792E-3 7 3157 7 6292
regulation of gene expression 9.92E-3 7 445 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleic acid binding 2.2923E-4 7 666 5 6292
RNA binding 3.4624E-4 7 367 4 6292
structural constituent of ribosome 1.194E-3 7 212 3 6292
structural molecule activity 4.6122E-3 7 339 3 6292
binding 5.2851E-3 7 1294 5 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle