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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

90S preribosome 1.9058E-4 8 17 2 6292
cytosolic ribosome 2.1208E-4 8 101 3 6292
non-membrane-bounded organelle 2.6233E-4 8 959 6 6292
intracellular non-membrane-bounded organelle 2.6233E-4 8 959 6 6292
cytosolic part 3.71E-4 8 122 3 6292
preribosome 7.7767E-4 8 34 2 6292
cytosolic small ribosomal subunit 9.7204E-4 8 38 2 6292
ribosomal subunit 1.2169E-3 8 183 3 6292
nucleolus 1.8378E-3 8 211 3 6292
ribonucleoprotein complex 2.361E-3 8 514 4 6292
small ribosomal subunit 3.5536E-3 8 73 2 6292
cytosol 4.3023E-3 8 284 3 6292
ribosome 4.565E-3 8 290 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosomal subunit assembly 3.5652E-7 8 55 4 6292
ribosome assembly 6.6114E-7 8 64 4 6292
organelle assembly 8.9725E-7 8 69 4 6292
ribonucleoprotein complex assembly 2.866E-6 8 92 4 6292
ribosomal large subunit assembly 1.4063E-5 8 41 3 6292
ribosome biogenesis 2.3852E-5 8 346 5 6292
ribonucleoprotein complex biogenesis 3.4865E-5 8 374 5 6292
translation 3.5782E-5 8 376 5 6292
cellular macromolecular complex assembly 4.33E-5 8 182 4 6292
ribosomal large subunit biogenesis 5.6801E-5 8 65 3 6292
gene expression 9.518E-5 8 1283 7 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.0958E-4 8 13 2 6292
cellular macromolecular complex subunit organization 1.7229E-4 8 259 4 6292
macromolecular complex assembly 2.3642E-4 8 281 4 6292
rRNA processing 4.2742E-4 8 128 3 6292
rRNA metabolic process 5.2205E-4 8 137 3 6292
macromolecular complex subunit organization 5.9444E-4 8 357 4 6292
cellular component biogenesis 6.7771E-4 8 694 5 6292
cellular component assembly 7.9316E-4 8 385 4 6292
ncRNA processing 1.9402E-3 8 215 3 6292
regulation of translation 2.1802E-3 8 57 2 6292
maturation of SSU-rRNA 2.3343E-3 8 59 2 6292
posttranscriptional regulation of gene expression 2.4935E-3 8 61 2 6292
regulation of cellular protein metabolic process 3.0901E-3 8 68 2 6292
ncRNA metabolic process 3.2376E-3 8 257 3 6292
regulation of protein metabolic process 3.6499E-3 8 74 2 6292
cellular macromolecule metabolic process 4.5244E-3 8 2285 7 6292
cellular protein metabolic process 5.103E-3 8 1074 5 6292
macromolecule metabolic process 5.4192E-3 8 2349 7 6292
protein metabolic process 6.5695E-3 8 1136 5 6292
cellular macromolecule biosynthetic process 7.9943E-3 8 1187 5 6292
macromolecule biosynthetic process 8.0545E-3 8 1189 5 6292
RNA processing 9.7426E-3 8 380 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA binding 7.4989E-7 8 16 3 6292
RNA binding 9.5895E-7 8 367 6 6292
nucleic acid binding 1.0515E-6 8 666 7 6292
structural constituent of ribosome 7.8854E-5 8 212 4 6292
binding 1.0087E-4 8 1294 7 6292
structural molecule activity 4.8751E-4 8 339 4 6292
7S RNA binding 1.2715E-3 8 1 1 6292
5S rRNA binding 2.5415E-3 8 2 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle