YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|34862070, gi|...

General Information:
Name(s) found: gi|34862070 [NCBI NR]
gi|109477895 [NCBI NR]
Description(s) found:
Found 10 descriptions.
SHOW ALL
  • ref|XP_345631.1| similar to Six2 [Rattus norvegicus] [NCBI NR]
  • gi|109477895|ref|XP_345631.3| PREDICTED: similar to Homeobox protein SIX2 (Sine oculis homeobox homolog 2) [Rattus norvegicus] [NCBI NR]
    • Organism: Rattus norvegicus
    Length: 296 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][IEA]
    Biological Process: mesenchymal to epithelial transition involved in metanephros morphogenesis [UNKNOWN]
    metanephros development [UNKNOWN]
    kidney development [UNKNOWN]
    negative regulation of cell differentiation [UNKNOWN]
    protein import into nucleus [UNKNOWN]
    regulation of transcription, DNA-dependent [IEA]
    middle ear morphogenesis [UNKNOWN]
    positive regulation of transcription from RNA polymerase II promoter [UNKNOWN]
    embryonic skeletal system morphogenesis [UNKNOWN]
    Molecular Function: transcription factor activity [UNKNOWN][IEA]
    sequence-specific DNA binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMLPTFGFT QEQVACVCEV LQQGGNIERL GRFLWSLPAC EHLHKNESVL KAKAVVAFHR  60
   61 GNFRELYKIL ESHQFSPHNH AKLQQLWLKA HYIEAEKLRG RPLGAVGKYR VRRKFPLPRS 120
  121 IWDGEETSYC FKEKSRSVLR EWYAHNPYPS PREKRELAEA TGLTTTQVSN WFKNRRQRDR 180
  181 AAEAKERENS ENSNSSSHNP LASSLNGSGK SVLGSSEDEK TPSGTPDHSS SSPALLLSPP 240
  241 PPPGLPSLHS LGHPPGPSAV PVPVPGGGGA DPLQHHHSLQ DSILNPMSAN LVDLGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] PSI-BLAST 29.30103 Oct-1 POU Homeodomain; Oct-1
    2 View Details [195..296] MSA 4.150997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle