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Protein Overview: gi|1209535, gi|1...

General Information:
Name(s) found: gi|74191976 [NCBI NR]
gi|6754124 [NCBI NR]
gi|3811392 [NCBI NR]
gi|148678307 [NCBI NR]
gi|1209561 [NCBI NR]
gi|1209559 [NCBI NR]
gi|1209535 [NCBI NR]
gi|1083415 [NCBI NR]
Description(s) found:
Found 20 descriptions.
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  • gi|74191976|dbj|BAE32928.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|6754124|ref|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus musculus] [NCBI NR]
  • gi|3811392|gb|AAC69908.1| H2-M beta 2 [Mus musculus] [NCBI NR]
  • gi|148678307|gb|EDL10254.1| mCG132703, isoform CRA_a [Mus musculus] [NCBI NR]
  • gi|1209561|gb|AAA91145.1| MHC class II H2-M beta 2 chain [NCBI NR]
  • gi|1209559|gb|AAA91144.1| MHC class II H2-M beta 2 chain [NCBI NR]
  • gi|1209535|gb|AAA98930.1| H2-M beta 2 chain [NCBI NR]
  • pir||A55242 MHC class II histocompatibility antigen H-2M beta-2 chain precursor - mouse [NCBI NR]
    • Organism: Mus musculus
    Length: 261 amino acids

    Gene Ontology:
    Cellular Component: MHC class II protein complex [IEA]
    integral to membrane [IDA]
    late endosome [IDA]
    endosome membrane [IDA]
    multivesicular body [IDA]
    lysosomal membrane [IDA]
    lysosome [IDA]
    Biological Process: antigen processing and presentation of peptide or polysaccharide antigen via MHC class II [IEA]
    antigen processing and presentation [UNKNOWN][IDA]
    chaperone mediated protein folding requiring cofactor [IDA]
    antigen processing and presentation of exogenous peptide antigen via MHC class II [IDA]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALWLLLLV LSLHCMGAGG FVAHVESTCV LNDAGTPQDF TYCVSFNKDL LACWDPDVGK  60
   61 IVPCEFGVLS RLAEIISNIL NEQESLIHRL QNGLQDCATH TQPFWDVLTH RTRAPSVRVA 120
  121 QTTPFNTREP VMLACYVWGF YPADVTITWM KNGQLVPSHS NKEKTAQPNG DWTYQTVSYL 180
  181 ALTPSYGDVY TCVVQHSGTS EPIRGDWTPG LSPIQTVKVS VSAATLGLGF IIFCVGFFRW 240
  241 RKSHSSSYTP LPGSTYPEGR H

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..261] PSI-BLAST 39.0 Class II MHC beta chain, C-terminal domain; Class II MHC beta chain, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptide antigen binding
    		•  11.0753660234769 bayes_pls_golite062009
  • olfactory receptor activity
    		•  8.50611980376815 bayes_pls_golite062009
  • antigen binding
    		•  7.67141746788228 bayes_pls_golite062009
  • lipid antigen binding
    		•  4.82286265971588 bayes_pls_golite062009
  • endogenous lipid antigen binding
    		•  4.69113685883551 bayes_pls_golite062009
  • receptor activity
    		•  3.04238248088254 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  2.91649681515985 bayes_pls_golite062009
  • MHC class I receptor activity
    		•  2.8317290648207 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.59970257426838 bayes_pls_golite062009
  • signal transducer activity
    		•  2.59970257426838 bayes_pls_golite062009
  • IgG binding
    		•  2.59905791929203 bayes_pls_golite062009
  • natural killer cell lectin-like receptor binding
    		•  2.3496397305448 bayes_pls_golite062009
  • protein binding
    		•  2.20481087437436 bayes_pls_golite062009
  • binding
    		•  2.11682283742138 bayes_pls_golite062009
  • fibroblast growth factor 1 binding
    		•  1.37360564853216 bayes_pls_golite062009
  • growth factor binding
    		•  1.1520564031101 bayes_pls_golite062009
  • IgG receptor activity
    		•  1.15013317153047 bayes_pls_golite062009
  • receptor binding
    		•  0.96769592478452 bayes_pls_golite062009
  • fibroblast growth factor binding
    		•  0.962566971314929 bayes_pls_golite062009
  • exogenous lipid antigen binding
    		•  0.763929387638141 bayes_pls_golite062009
  • coreceptor activity
    		•  0.661209696849389 bayes_pls_golite062009
  • G-protein coupled receptor activity
    		•  0.4860421936 bayes_pls_golite062009
  • MHC class II receptor activity
    		•  0.251167772391909 bayes_pls_golite062009
  • peptide binding
    		•  0.2334349814724 bayes_pls_golite062009
  • hydrolase activity
    		•  0.206657304371779 bayes_pls_golite062009
  • catalytic activity
    		•  0.115804452291889 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle