YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1209535, gi\|1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALWLLLLV LSLHCMGAGG FVAHVESTCV LNDAGTPQDF TYCVSFNKDL LACWDPDVGK  60
   61 IVPCEFGVLS RLAEIISNIL NEQESLIHRL QNGLQDCATH TQPFWDVLTH RTRAPSVRVA 120
  121 QTTPFNTREP VMLACYVWGF YPADVTITWM KNGQLVPSHS NKEKTAQPNG DWTYQTVSYL 180
  181 ALTPSYGDVY TCVVQHSGTS EPIRGDWTPG LSPIQTVKVS VSAATLGLGF IIFCVGFFRW 240
  241 RKSHSSSYTP LPGSTYPEGR H

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	218	0.99
Transmembrane Helix	219	240	0.87
Cytoplasmic	241	261	0.95