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Protein Overview: lola-PK

General Information:
Name(s) found: lola-PK / FBpp0088387 [FlyBase]
Description(s) found:
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  • gi|45552057|ref|NP_788316.2| longitudinals lacking, isoform K [Drosophila melanogaster] [NCBI NR]
  • gi|45445601|gb|AAM68764.3| longitudinals lacking, isoform K [Drosophila melanogaster] [NCBI NR]
  • gi|29539523|dbj|BAC67644.1| Lola protein isoform H [Drosophila melanogaster] [NCBI NR]
  • gi|29539483|dbj|BAC67624.1| Lola protein isoform H [Drosophila melanogaster] [NCBI NR]
  • gi|29539443|dbj|BAC67604.1| Lola protein isoform H [Drosophila melanogaster] [NCBI NR]
  • gi|29539403|dbj|BAC67584.1| Lola protein isoform H [Drosophila melanogaster] [NCBI NR]
  • The gene longitudinals lacking is referred to in FlyBase by the symbol Dmel\lola (CG12052, FBgn0005630). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:6369712..6430767. It has the cytological map location 47A11-47A13. There is experimental evidence that it has the molecular function</span>: protein binding. There is experimental evidence for 12 unique biological process</span> terms, many of which group under: anatomical structure development; cell projection organization; cellular component movement; behavior; sensory organ development; organ morphogenesis; immune response; programmed cell death; neuromuscular process; behavioral interaction between organisms; locomotory behavior; regulation of metabolic process. 163 alleles are reported. The phenotypes of these alleles are annotated with 40 unique terms, many of which group under: peripheral nervous system; nervous system; abdominal lateral monoscolopidial chordotonal organ lch1; embryonic neuron; embryonic nervous system; organ system; multi-cell-component structure; adult segment; abdominal longitudinal muscle; ventral longitudinal muscle. It has 26 annotated transcripts and 26 annotated polypeptides. [FlyBase]
  • (AAM68764) CG12052-PK [DrosMelano7227.FASTAC.txt]
  • CG12052-PK, isoform K [Drosophila melanogaster]gi|29539523|dbj|BAC67644.1| Lola protein isoform H [Drosophila melanogaster]gi|29539483|dbj|BAC67624.1| Lola protein isoform H [Drosophila melanogaster]gi|29539443|dbj|BAC67604.1| Lola protein isoform H [D [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(6405430..6405707,6419544..6419624,6419686..6420399,6420623..6421016,6421081..6421254); ID=FBpp0088387; name=lola-PK; parent=FBgn0005630,FBtr0089353; dbxref=FlyBase_Annotation_IDs:CG12052-PK,FlyBase:FBpp0088387,GB_protein:AA [fly-100309-contam.fasta]
  • Lola protein isoform H [Drosophila melanogaster] [nr-271106-contam.fasta]
  • longitudinals lacking CG12052-PK, isoform K [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG12052-PK, isoform K [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(6405430..6405707,6419544..6419624,6419686..6420399,6420623..6421016,6421081..6421254); ID=FBpp0088387; name=lola-PK; parent=FBgn0005630,FBtr0089353; dbxref=FlyBase_Annotation_IDs:CG12052-PK,FlyBase:FBpp0088387,GB_protein:AAM68764.3,REFSEQ:NP_788316,GB_protein:AAM68764; MD5=df25684cb01de28a13813be7944c8b65; length=546; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(6405430..6405707,6419544..6419624,6419686..6420399,6420623..6421016,6421081..6421254); ID=FBpp0088387; name=lola-PK; parent=FBgn0005630,FBtr0089353; dbxref=FlyBase_Annotation_IDs:CG12052-PK,FlyBase:FBpp0088387,GB_protein:AAM68764.3,REFSEQ:NP_788316,GB_protein:AAM68764; MD5=df25684cb01de28a13813be7944c8b65; length=546; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Isoform K of Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(6405430..6405707,6419544..6419624,6419686..6420399,6420623..6421016,6421081..6421254); ID=FBpp0088387; name=lola-PK; parent=FBgn0005630,FBtr0089353; dbxref=FlyBase_Annotation_IDs:CG12052-PK,FlyBase:FBpp0088387,GB_protein:AAM68764.3,REFSEQ:NP_788316,GB_protein:AAM68764,FlyMine:FBpp0088387,modMine:FBpp0088387; MD5=df25684cb01de28a13813be7944c8b65; length=546; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(10533576..10533749,10533118..10533511,10532181..10532894,10532039..10532119,10517925..10518202)); ID=FBpp0088387; name=lola-PK; parent=FBgn0005630,FBtr0089353; dbxref=FlyBase_Annotation_IDs:CG12052-PK,FlyBase:FBpp0088387,GB_protein:AAM68764.3,REFSEQ:NP_788316,GB_protein:AAM68764,FlyMine:FBpp0088387,modMine:FBpp0088387; MD5=df25684cb01de28a13813be7944c8b65; length=546; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(10533576..10533749,10533118..10533511,10532181..10532894,10532039..10532119,10517925..10518202)); ID=FBpp0088387; name=lola-PK; parent=FBgn0005630,FBtr0089353; dbxref=FlyBase_Annotation_IDs:CG12052-PK,FlyBase:FBpp0088387,GB_protein:AAM68764.3,REFSEQ:NP_788316,GB_protein:AAM68764,FlyMine:FBpp0088387,modMine:FBpp0088387; MD5=df25684cb01de28a13813be7944c8b65; length=546; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q867Z4, Isoform K of Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola [DROME.fasta.20160308]
  • FBpp0088387 type=protein; loc=2R:complement(join(10533576..10533749,10533118..10533511,10532181..10532894,10532039..10532119,10517925..10518202)); ID=FBpp0088387; name=lola-PK; parent=FBgn0283521,FBtr0089353; dbxref=FlyBase_Annotation_IDs:CG12052-PK,FlyBase:FBpp0088387,GB_protein:AAM68764.3,REFSEQ:NP_788316,GB_protein:AAM68764,FlyMine:FBpp0088387,modMine:FBpp0088387; MD5=df25684cb01de28a13813be7944c8b65; length=546; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(10533576..10533749,10533118..10533511,10532181..10532894,10532039..10532119,10517925..10518202)); ID=FBpp0088387; name=lola-PK; parent=FBgn0283521,FBtr0089353; dbxref=FlyBase_Annotation_IDs:CG12052-PK,FlyBase:FBpp0088387,GB_protein:AAM68764.3,REFSEQ:NP_788316,GB_protein:AAM68764,FlyMine:FBpp0088387,modMine:FBpp0088387; MD5=df25684cb01de28a13813be7944c8b65; length=546; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 546 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDDQQFCLR WNNHQSTLIS VFDTLLENET LVDCTLAAEG KFLKAHKVVL SACSPYFATL  60
   61 LQEQYDKHPI FILKDVKYQE LRAMMDYMYR GEVNISQDQL AALLKAAESL QIKGLSDNRT 120
  121 GGGVAPKPES SGHHRGGKLS GAYTLEQTKR ARLATGGAMD TSGDVSGSRE GSSSPSRRRR 180
  181 KVRRRSMEND AHDNSNSSVL QAAASNQSIL QQTGAGLAVS ALVTTQLSSG PAAGTSSQAS 240
  241 STQQQQPLTS TNVTKKTESA KLTSSTAAPA SGASASAAVQ QAHLHQQQAQ TTSDAINTEN 300
  301 VQAQSQGGAQ GVQGDDEDID EGSAVGGPNS ATGPNPASAS ASAVHAGVVV KQLASVVDKS 360
  361 SSNHKHKIKD NSVSSVGSEM VIEPKAEYDD DAHDENVEDL TLDEEDMTME ELDQTAGTSQ 420
  421 GGEGSSQTYA TWQHDRSQDE LGLMAQDAQQ RDPQDFVLTW YQHACDQCGK SYKTRKSLSR 480
  481 HRRFECRFTT ERPIFQCPSC NYAAKRSDNL TKHIKTHFAK MKKDFLPLAF QMQASTGIAT 540
  541 KWEATA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] PSI-BLAST 13.522879 No description for 2ihcA was found.
    2 View Details [139..229] PSI-BLAST 15.69897 Transcription factor IIIA, TFIIIA
    3 View Details [230..416] PSI-BLAST 53.522879 No description for 2i13A was found.
    4 View Details [417..546] PSI-BLAST 16.522879 ZIF268

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  4.70988788192472 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.58713908116892 bayes_pls_golite062009
  • DNA binding
    		•  4.56219307357342 bayes_pls_golite062009
  • transcription activator activity
    		•  3.52873291636993 bayes_pls_golite062009
  • transcription factor activity
    		•  3.50954949535763 bayes_pls_golite062009
  • transcription repressor activity
    		•  3.27542149084008 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.22082323675675 bayes_pls_golite062009
  • binding
    		•  3.10743787485868 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.53101891154822 bayes_pls_golite062009
  • chromatin binding
    		•  2.18464662431232 bayes_pls_golite062009
  • protein binding
    		•  2.05530362750351 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.63161912031789 bayes_pls_golite062009
  • transcription factor binding
    		•  1.39608963544799 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.34049786451995 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.77874411480713 bayes_pls_golite062009
  • catalytic activity
    		•  0.245893663605433 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle