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Protein Overview: YPDF_ECOLI

General Information:
Name(s) found: YPDF_ECOLI [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Aminopeptidase ypdF (EC 3.4.11.-) - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 361 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLASLRDW LKAQQLDAVL LSSRQNKQPH LGISTGSGYV VISRESAHIL VDSRYYVEVE  60
   61 ARAQGYQLHL LDATNTLTTI VNQIIADEQL QTLGFEGQQV SWETAHRWQS ELNAKLVSAT 120
  121 PDVLRQIKTP EEVEKIRLAC GIADRGAEHI RRFIQAGMSE REIAAELEWF MRQQGAEKAS 180
  181 FDTIVASGWR GALPHGKASD KIVAAGEFVT LDFGALYQGY CSDMTRTLLV NGEGVSAESH 240
  241 LLFNVYQIVL QAQLAAISAI RPGVRCQQVD DAARRVITEA GYGDYFGHNT GHAIGIEVHE 300
  301 DPRFSPRDTT TLQPGMLLTV EPGIYLPGQG GVRIEDVVLV TPQGAEVLYA MPKTVLLTGE 360
  361 A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..361] PSI-BLAST 85.0 Prolidase from Pyrococcus furiosus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  2.76723095667188 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  2.32675126054468 bayes_pls_golite062009
  • hydrolase activity
    		•  1.32640177567297 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.11241584879462 bayes_pls_golite062009
  • metallopeptidase activity
    		•  1.0610925051469 bayes_pls_golite062009
  • aminopeptidase activity
    		•  0.53115813873012 bayes_pls_golite062009
  • catalytic activity
    		•  0.51899181055614 bayes_pls_golite062009
  • metalloexopeptidase activity
    		•  0.0416763295703397 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle