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Protein Overview: SO4123

General Information:
Name(s) found: SO4123 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
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  • gi|38372524|sp|Q8E9Y7.1|SYR_SHEON RecName: Full=Arginyl-tRNA synthetase; AltName: Full=Arginine--tRNA ligase; Short=ArgRS [NCBI NR]
  • Arginine--tRNA ligase OS=Shewanella oneidensis GN=argS PE=3 SV=1 [Swiss-Prot]
  • arginyl-tRNA synthetase [Shewanella oneidensis MR-1]gi|24350506|gb|AAN57096.1| arginyl-tRNA synthetase [Shewanella oneidensis MR-1]gi|38372524|sp|Q8E9Y7|SYR_SHEON Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) [nrdb_11152004_Chlamydomonas]
  • arginyl-tRNA synthetase [shew_pnnl_plus_contams_psm.fasta]
  • Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) [nr-271106-contam.fasta]
  • Arginine--tRNA ligase OS=Shewanella oneidensis (strain MR-1) GN=argS PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Shewanella oneidensis
    Length: 581 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSHIQSLLE QTIESFKQQG ILPADFEARI QVDRTKDKSH GDLATNVAMM LTKAAGKNPR  60
   61 ELAQLIIDNL PASAYVAKVE IAGPGFINFF IDDSALANQL QAAIGDEHLG IKLPAPQTVV 120
  121 VDYSSPNLAK EMHVGHLRST IIGDSVVRTL EFLGHKVIRQ NHVGDWGTQF GMLLAYMEEL 180
  181 RAANGEQAQL ELSDLETFYR AAKLRFDESA EFATRARQLV VALQSGDEYC NKLWREFNDI 240
  241 SLSHCHEVYE RLGVSLTRAD VHGESAYNAD LEQVVNDLAA KGLLTESNGA KVVFQEEFRT 300
  301 KEGEPLPVII QKADGGYLYA TTDLAAMRYR SNVLKADRVL YFVDLRQALH FQQVFSLAKL 360
  361 AKFVREDMSL EHLGFGTMNG EDGRPFKTRT GGVVKLVDLL DEANTRALEL VRSKNPDMDE 420
  421 ATLAEIARVV GISAVKYADL SKNRTSDYIF SFEQMLSFEG NTAPYLLYAY TRVAGIFKRA 480
  481 TDVDLSQAKI VLEHEKEKDL GNKLAQFGEI LSRVVDKGQP HVLCGYLYEL AGAFSSFYEA 540
  541 CPVLAADNDE QKHSRLLLSQ LTASTLQKGL NLLGIETLER M

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..581] PSI-BLAST 80.69897 Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  5.72854650987135 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  3.76808520367507 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.03251266786448 bayes_pls_golite062009
  • binding
    		•  0.965037527908742 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.564359271862248 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle