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View Structure Prediction Details

Protein: SO4123
Organism: Shewanella oneidensis
Length: 581 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO4123.

Description E-value Query
Range		 Subject
Range
SYR_SHESW - Arginine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=argS PE=3 SV=1
 438.0 [0..1] [581..1]
SYR_SHEB2 - Arginine--tRNA ligase OS=Shewanella baltica (strain OS223) GN=argS PE=3 SV=1
SYR_SHEB8 - Arginine--tRNA ligase OS=Shewanella baltica (strain OS185) GN=argS PE=3 SV=1
SYR_SHEB9 - Arginine--tRNA ligase OS=Shewanella baltica (strain OS195) GN=argS PE=3 SV=1
 437.0 [0..1] [581..1]
SYR_SHEPC - Arginine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=argS PE=3 SV=1
 436.0 [0..1] [581..1]
SYR_SHEB5 - Arginine--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=argS PE=3 SV=1
 435.0 [0..1] [581..1]
SYR_SHESM - Arginine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=argS PE=3 SV=1
 433.0 [0..1] [581..1]
SYR_SHESA - Arginine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=argS PE=3 SV=1
 433.0 [0..1] [581..1]
SYR_SHESR - Arginine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=argS PE=3 SV=1
 433.0 [0..1] [581..1]
SYR_SHEFN - Arginine--tRNA ligase OS=Shewanella frigidimarina (strain NCIMB 400) GN=argS PE=3 SV=1
 432.0 [0..1] [581..1]
SYR_SHELP - Arginine--tRNA ligase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=argS PE=3 SV=1
 431.0 [0..1] [581..1]
SYR_SHEAM - Arginine--tRNA ligase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=argS PE=3 SV=1
 426.0 [0..1] [581..1]

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Predicted Domain #1
Region A:
Residues: [1-581] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSHIQSLLE QTIESFKQQG ILPADFEARI QVDRTKDKSH GDLATNVAMM LTKAAGKNPR  60
   61 ELAQLIIDNL PASAYVAKVE IAGPGFINFF IDDSALANQL QAAIGDEHLG IKLPAPQTVV 120
  121 VDYSSPNLAK EMHVGHLRST IIGDSVVRTL EFLGHKVIRQ NHVGDWGTQF GMLLAYMEEL 180
  181 RAANGEQAQL ELSDLETFYR AAKLRFDESA EFATRARQLV VALQSGDEYC NKLWREFNDI 240
  241 SLSHCHEVYE RLGVSLTRAD VHGESAYNAD LEQVVNDLAA KGLLTESNGA KVVFQEEFRT 300
  301 KEGEPLPVII QKADGGYLYA TTDLAAMRYR SNVLKADRVL YFVDLRQALH FQQVFSLAKL 360
  361 AKFVREDMSL EHLGFGTMNG EDGRPFKTRT GGVVKLVDLL DEANTRALEL VRSKNPDMDE 420
  421 ATLAEIARVV GISAVKYADL SKNRTSDYIF SFEQMLSFEG NTAPYLLYAY TRVAGIFKRA 480
  481 TDVDLSQAKI VLEHEKEKDL GNKLAQFGEI LSRVVDKGQP HVLCGYLYEL AGAFSSFYEA 540
  541 CPVLAADNDE QKHSRLLLSQ LTASTLQKGL NLLGIETLER M

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.69897
Match: 1bs2A
Description: Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ligase activity, forming aminoacyl-tRNA and related compounds 7.16276509815667 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 7.16276509815667 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 7.13957775963187 bayes_pls_golite062009
ligase activity 6.11211476973434 bayes_pls_golite062009
arginine-tRNA ligase activity 5.72854650987135 bayes_pls_golite062009
isoleucine-tRNA ligase activity 3.76808520367507 bayes_pls_golite062009
glutamate-tRNA ligase activity 2.63681738794687 bayes_pls_golite062009
methionine-tRNA ligase activity 2.56893064485672 bayes_pls_golite062009
catalytic activity 2.37674226834122 bayes_pls_golite062009
tyrosine-tRNA ligase activity 1.88984817882585 bayes_pls_golite062009
tryptophan-tRNA ligase activity 1.14187887833901 bayes_pls_golite062009
nucleic acid binding 1.03251266786448 bayes_pls_golite062009
binding 0.965037527908742 bayes_pls_golite062009
cysteine-tRNA ligase activity 0.844943947059557 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.625793556381714 bayes_pls_golite062009
nucleotidyltransferase activity 0.564359271862248 bayes_pls_golite062009
glutamine-tRNA ligase activity 0.118292082006187 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle