YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: GABP_ECOLI

General Information:
Name(s) found: GABP_ECOLI [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • GABA permease (4-amino butyrate transport carrier) (Gamma-aminobutyrate permease) - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 466 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQSSQPHEL GGGLKSRHVT MLSIAGVIGA SLFVGSSVAI AEAGPAVLLA YLFAGLLVVM  60
   61 IMRMLAEMAV ATPDTGSFST YADKAIGRWA GYTIGWLYWW FWVLVIPLEA NIAAMILHSW 120
  121 VPGIPIWLFS LVITLALTGS NLLSVKNYGE FEFWLALCKV IAILAFIFLG AVAISGFYPY 180
  181 AEVSGISRLW DSGGFMPNGF GAVLSAMLIT MFSFMGAEIV TIAAAESDTP EKHIVRATNS 240
  241 VIWRISIFYL CSIFVVVALI PWNMPGLKAV GSYRSVLELL NIPHAKLIMD CVILLSVTSC 300
  301 LNSALYTASR MLYSLSRRGD APAVMGKINR SKTPYVAVLL STGAAFLTVV VNYYAPAKVF 360
  361 KFLIDSSGAI ALLVYLVIAV SQLRMRKILR AEGSEIRLRM WLYPWLTWLV IGFITFVLVV 420
  421 MLFRPAQQLE VISTGLLAIG IICTVPIMAR WKKLVLWQKT PVHNTR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..391] FFAS03 1.33 Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
    2 View Details [392..466] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • amine transmembrane transporter activity
    		•  5.15069657292327 bayes_pls_golite062009
  • amino acid transmembrane transporter activity
    		•  4.54752581624334 bayes_pls_golite062009
  • carboxylic acid transmembrane transporter activity
    		•  4.39427743642027 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  4.356142166703 bayes_pls_golite062009
  • transporter activity
    		•  3.46503611631839 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.34431027577801 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.08398439124803 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  2.98812190037621 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.96577701947757 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  1.89542769737674 bayes_pls_golite062009
  • organic acid:sodium symporter activity
    		•  1.82263833070018 bayes_pls_golite062009
  • L-amino acid transmembrane transporter activity
    		•  1.79964917042361 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.79923665576923 bayes_pls_golite062009
  • neutral amino acid transmembrane transporter activity
    		•  1.71764370341895 bayes_pls_golite062009
  • monoamine transmembrane transporter activity
    		•  1.59349600647168 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.37015067735708 bayes_pls_golite062009
  • symporter activity
    		•  1.31198147603118 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  1.31198147603118 bayes_pls_golite062009
  • solute:sodium symporter activity
    		•  0.868753445363102 bayes_pls_golite062009
  • neurotransmitter:sodium symporter activity
    		•  0.658077875061275 bayes_pls_golite062009
  • binding
    		•  0.299468111884938 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle