YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GABP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.96
Transmembrane Helix	19	40	0.92
Non-Cytoplasmic	41	46	0.74
Transmembrane Helix	47	66	0.92
Cytoplasmic	67	95	0.80
Transmembrane Helix	96	117	0.75
Non-Cytoplasmic	118	123	0.75
Transmembrane Helix	124	145	0.91
Cytoplasmic	146	154	0.90
Transmembrane Helix	155	178	0.89
Non-Cytoplasmic	179	199	0.89
Transmembrane Helix	200	222	0.91
Cytoplasmic	223	240	0.92
Transmembrane Helix	241	262	0.93
Non-Cytoplasmic	263	286	0.91
Transmembrane Helix	287	308	0.89
Cytoplasmic	309	334	0.88
Transmembrane Helix	335	355	0.95
Non-Cytoplasmic	356	361	0.84
Transmembrane Helix	362	383	0.90
Cytoplasmic	384	400	0.95
Transmembrane Helix	401	423	0.92
Non-Cytoplasmic	424	430	0.80
Transmembrane Helix	431	451	0.92
Cytoplasmic	452	466	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQSSQPHEL GGGLKSRHVT MLSIAGVIGA SLFVGSSVAI AEAGPAVLLA YLFAGLLVVM  60
   61 IMRMLAEMAV ATPDTGSFST YADKAIGRWA GYTIGWLYWW FWVLVIPLEA NIAAMILHSW 120
  121 VPGIPIWLFS LVITLALTGS NLLSVKNYGE FEFWLALCKV IAILAFIFLG AVAISGFYPY 180
  181 AEVSGISRLW DSGGFMPNGF GAVLSAMLIT MFSFMGAEIV TIAAAESDTP EKHIVRATNS 240
  241 VIWRISIFYL CSIFVVVALI PWNMPGLKAV GSYRSVLELL NIPHAKLIMD CVILLSVTSC 300
  301 LNSALYTASR MLYSLSRRGD APAVMGKINR SKTPYVAVLL STGAAFLTVV VNYYAPAKVF 360
  361 KFLIDSSGAI ALLVYLVIAV SQLRMRKILR AEGSEIRLRM WLYPWLTWLV IGFITFVLVV 420
  421 MLFRPAQQLE VISTGLLAIG IICTVPIMAR WKKLVLWQKT PVHNTR