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Protein Overview: SO1297

General Information:
Name(s) found: SO1297 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • general secretion pathway protein a [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 554 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKAFYGLSD NPFSIAPNPH YLFLSDRHRE ALAHLTYGLG ETGGFVLLTG EVGTGKTTVS  60
   61 RCLLGQLPDN TDTAFILNPS LTELELLATL CDELKISYGE NPTLKQLTDH LSRFLLANHE 120
  121 KGRKTVLIID EAQHLRAEVL EQLRLLTNLE TDTKKLLQVI LIGQPELQLL LKRQELRQLA 180
  181 QRITARYHLL PLNEDEITLY VLHRLQVAGR FEPLFTRKAI KVLHKYSGGI PRLINLLCER 240
  241 ALMAGYAQSK VPIDHHMVRQ AAAEVLGEEK PSQNKFLWPS AIAAALVLTF GVSYWLFTDH 300
  301 AVVATVANEN VTQPKQTVIA ENAVQQSQTA LTNTAPAITL AQTPAAPDPN LRVLQEAIKQ 360
  361 SRQIDTAFAG LFNVWGKVPF KGLTACQSAF EQGLSCYQQQ GNWMSLTRLN YPAVVYLVDD 420
  421 NQQDFYGAVI AVDGEQLLMQ LGEQQLWVER TWFNQHFSGT FEILWQAPNL PMMEISQKSS 480
  481 PGQLQWLENA LAHVAKRPSR RVSQFDLKLE NDLKAFQSQH GLKADGIAGN QTLVRLNLYL 540
  541 SDQGPRLTDN GAQS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..554] PSI-BLAST 41.221849 Crystal Structure Analysis of ClpB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein transporter activity
    		•  4.96050219760327 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.95079405147356 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.87427509025394 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.85499564954033 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.85178667290149 bayes_pls_golite062009
  • transporter activity
    		•  2.58140740499725 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.39695871109024 bayes_pls_golite062009
  • ATPase activity
    		•  2.39535714892224 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  2.18396165590908 bayes_pls_golite062009
  • binding
    		•  1.8576045268999 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  1.80249404515499 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  1.79104521657582 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  1.72596995524566 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.72417939639501 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  1.71919653053162 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  1.71868752128533 bayes_pls_golite062009
  • hydrolase activity
    		•  1.57549510726226 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.29730375126024 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.929901285538132 bayes_pls_golite062009
  • nucleotide binding
    		•  0.922442819194247 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.920987930180051 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.920926158369519 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.906554174337376 bayes_pls_golite062009
  • motor activity
    		•  0.87979065815418 bayes_pls_golite062009
  • ATP binding
    		•  0.41092997612902 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.385813421701492 bayes_pls_golite062009
  • protein binding
    		•  0.378225828131122 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.377870145186619 bayes_pls_golite062009
  • guanyl nucleotide binding
    		•  0.373350189511011 bayes_pls_golite062009
  • guanyl ribonucleotide binding
    		•  0.363151049799385 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.355466224802969 bayes_pls_golite062009
  • GTP binding
    		•  0.343113158179248 bayes_pls_golite062009
  • GTPase activity
    		•  0.105546189348878 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.0254369227200564 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.50

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle