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Protein Overview: SO0173

General Information:
Name(s) found: SO0173 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • general secretion pathway protein K [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 332 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRQSPAKQR GVALIVVLLI VAMVVIIATN ITSRNQLSMR RTLNLAQYDQ AYWYAISAEE  60
   61 LAKKILKQDL DDSEGRVHKQ QYWAMSDVVF PAEYGEIAGK ISDMRSCFNL NALSVTTKDV 120
  121 ENGQPKLPLA AKQYKALLVS LGMDDFTADH LTQTLKDYID EDTVASPYGA EDAEYEARHV 180
  181 PYRAANTLMN HRSELRAVMG YTQDIYLKLL PYICVIPGSD RQLLNVNTID VEQAALLAAM 240
  241 VDNQISVGEA ESVINQRPGD GFAKIDDFYE SSSMGSIKWE DAMKSTFVID SQYFLLASGA 300
  301 KVDNAIFRME SVLKKGSGNK MDVLTRQFGG QK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..123] MSA 7.136997 View MSA. No confident structure predictions are available.
    2 View Details [124..332] PSI-BLAST 3.39794 No description for 2oceA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity
    		•  2.05683355697643 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.84247083043472 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.77126670929767 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.75283705466699 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.75052536857149 bayes_pls_golite062009
  • catalytic activity
    		•  1.01731159573515 bayes_pls_golite062009
  • protein binding
    		•  0.822405322523231 bayes_pls_golite062009
  • binding
    		•  0.789516277654846 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  0.725484517901213 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.694310500879056 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.411733726289994 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.376109811653741 bayes_pls_golite062009
  • excinuclease ABC activity
    		•  0.245497486623546 bayes_pls_golite062009
  • nuclease activity
    		•  0.183311162116772 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle